| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00034263m |
| Family | GT19 |
| Protein Properties | Length: 185 Molecular Weight: 20679.3 Isoelectric Point: 9.8834 |
| Chromosome | Chromosome/Scaffold: 032183 Start: 3367 End: 6436 |
| Description | transferases, transferring glycosyl groups |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT19 | 2 | 167 | 1.26117e-44 |
| QEVVRMLPIFLHAVQNLRHTFNELSQVIPVAPHRDVKTYVEKAVQSGPFPVVLIPGGSLKERYDAFSASRAALCTSGTAVMELTLAKLPCVVAYQAHFIT ECLIHLRKKINFISLPNILLNSPVVPEVLFRACTAKNLATKLSKVISNDDVRQMQVESAGQVFQVL | |||
| Full Sequence |
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| Protein Sequence Length: 185 Download |
| MQEVVRMLPI FLHAVQNLRH TFNELSQVIP VAPHRDVKTY VEKAVQSGPF PVVLIPGGSL 60 KERYDAFSAS RAALCTSGTA VMELTLAKLP CVVAYQAHFI TECLIHLRKK INFISLPNIL 120 LNSPVVPEVL FRACTAKNLA TKLSKVISND DVRQMQVESA GQVFQVLYEP IKKRDKHQNI 180 VYRN* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14089 | PRK14089 | 0.0007 | 3 | 139 | 151 | + ipid-A-disaccharide synthase; Provisional | ||
| TIGR00215 | lpxB | 7.0e-20 | 2 | 171 | 172 | + lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. | ||
| pfam02684 | LpxB | 4.0e-24 | 2 | 176 | 175 | + Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide. | ||
| PRK00025 | lpxB | 8.0e-32 | 2 | 167 | 168 | + lipid-A-disaccharide synthase; Reviewed | ||
| COG0763 | LpxB | 1.0e-36 | 2 | 167 | 166 | + Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008915 | lipid-A-disaccharide synthase activity |
| GO:0009245 | lipid A biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI28885.1 | 0 | 1 | 172 | 227 | 398 | unnamed protein product [Vitis vinifera] |
| GenBank | EEC71491.1 | 0 | 1 | 174 | 261 | 434 | hypothetical protein OsI_03760 [Oryza sativa Indica Group] |
| RefSeq | NP_001044267.1 | 0 | 1 | 174 | 261 | 434 | Os01g0752600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001140462.1 | 0 | 1 | 175 | 257 | 431 | hypothetical protein LOC100272521 [Zea mays] |
| RefSeq | XP_002458499.1 | 0 | 1 | 175 | 237 | 411 | hypothetical protein SORBIDRAFT_03g034785 [Sorghum bicolor] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FL978570 | 185 | 1 | 185 | 0 |
| CB664616 | 174 | 1 | 174 | 0 |
| JG911216 | 178 | 36 | 185 | 0 |
| JG864023 | 143 | 1 | 143 | 0 |
| FL978571 | 129 | 57 | 185 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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