y
Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00034359m |
Family | GH28 |
Protein Properties | Length: 213 Molecular Weight: 22306.6 Isoelectric Point: 8.2493 |
Chromosome | Chromosome/Scaffold: 032460 Start: 6480 End: 7129 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 28 | 201 | 0 |
NTVIGVGDDCISIGPGTTKVNITGVTCGPGHGISIGSLGRYKDEKDVTDITVKDCTLKKSTNGLRIKAYEDAKSVLTASKIHYENIKMEDAANPIIIDMK YCPNKICTASGDSKVTVKDVSFKNVTGTSSTPEAVSLLCSDKIPCSGVTMDNVKVEYSGKNNKTMAVCNNAKGS |
Full Sequence |
---|
Protein Sequence Length: 213 Download |
MVIKDVTVTA PGDSPTRMAS TWVTRPGNTV IGVGDDCISI GPGTTKVNIT GVTCGPGHGI 60 SIGSLGRYKD EKDVTDITVK DCTLKKSTNG LRIKAYEDAK SVLTASKIHY ENIKMEDAAN 120 PIIIDMKYCP NKICTASGDS KVTVKDVSFK NVTGTSSTPE AVSLLCSDKI PCSGVTMDNV 180 KVEYSGKNNK TMAVCNNAKG SSTGCLKELA CL* 240 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 6.0e-44 | 1 | 212 | 217 | + polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-45 | 3 | 198 | 200 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-47 | 1 | 212 | 217 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 6.0e-63 | 6 | 204 | 206 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-64 | 1 | 199 | 204 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PIR | 0 | 1 | 212 | 148 | 363 | UP10_LACSN Unknown protein 10 from 2D-PAGE | |
EMBL | CAA40910.1 | 0 | 1 | 212 | 191 | 406 | polygalacturonase [Zea mays] |
RefSeq | NP_001105432.1 | 0 | 1 | 212 | 195 | 410 | exopolygalacturonase precursor [Zea mays] |
RefSeq | XP_002437275.1 | 0 | 1 | 212 | 195 | 410 | hypothetical protein SORBIDRAFT_10g024010 [Sorghum bicolor] |
RefSeq | XP_002438669.1 | 0 | 28 | 212 | 11 | 195 | hypothetical protein SORBIDRAFT_10g024000 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 0.00000000000006 | 35 | 197 | 175 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000006 | 35 | 197 | 175 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000006 | 35 | 197 | 175 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000000000006 | 35 | 197 | 175 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 0.00000000000006 | 35 | 197 | 175 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
FL752313 | 215 | 3 | 213 | 0 |
FL820096 | 197 | 21 | 213 | 0 |
FL806437 | 206 | 12 | 213 | 0 |
JG879063 | 186 | 28 | 213 | 0 |
FL770721 | 217 | 1 | 213 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|