Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00034360m |
Family | GH28 |
Protein Properties | Length: 378 Molecular Weight: 39878.6 Isoelectric Point: 9.4377 |
Chromosome | Chromosome/Scaffold: 032460 Start: 2220 End: 3832 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 48 | 364 | 0 |
KACATPRRPAVVVPGGGSNYLLHPLVFRGPCRGYMEVRVAGWVHFSNVDGLLVTGGGTFDGRGATAWPLNDCPKRRDCKLLPTSIKLGRVRNATITDVTS VDSKFFHVTVAGSRGVRIRAPRDSPNTDGVHIQGSSDVRVTDSAVATGDDCVSVGPGTSDVVVSGVTCGPGHGISVGSLGRYPGEEDVRRLRVANCTIAG TANGVRIKTWRGGSRPTAVAGLIFEDIVMVKVRNPIIIDQEYCPYASCRRESEQRPSAVRISDVKFRNIRGVSATQVAVKLSCSEASPCRGLELRDIDLR YVRRGVATQSECAHVAG |
Full Sequence |
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Protein Sequence Length: 378 Download |
MASRFGGALL LLLAMAATWL AAGGGPVFNV TDFGATDDSR AFLRAWMKAC ATPRRPAVVV 60 PGGGSNYLLH PLVFRGPCRG YMEVRVAGWV HFSNVDGLLV TGGGTFDGRG ATAWPLNDCP 120 KRRDCKLLPT SIKLGRVRNA TITDVTSVDS KFFHVTVAGS RGVRIRAPRD SPNTDGVHIQ 180 GSSDVRVTDS AVATGDDCVS VGPGTSDVVV SGVTCGPGHG ISVGSLGRYP GEEDVRRLRV 240 ANCTIAGTAN GVRIKTWRGG SRPTAVAGLI FEDIVMVKVR NPIIIDQEYC PYASCRRESE 300 QRPSAVRISD VKFRNIRGVS ATQVAVKLSC SEASPCRGLE LRDIDLRYVR RGVATQSECA 360 HVAGGVVGGT LVPPSCI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 6.0e-76 | 29 | 347 | 349 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 2.0e-80 | 27 | 377 | 381 | + polygalacturonase | ||
PLN02793 | PLN02793 | 8.0e-86 | 27 | 376 | 380 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-90 | 50 | 348 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-133 | 26 | 376 | 375 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN85236.1 | 0 | 1 | 377 | 1 | 412 | polygalacturonase precursor [Oryza minuta] |
GenBank | ACN85327.1 | 0 | 1 | 377 | 1 | 405 | polygalacturonase precursor [Oryza brachyantha] |
GenBank | EAZ37619.1 | 0 | 27 | 377 | 26 | 415 | hypothetical protein OsJ_21954 [Oryza sativa Japonica Group] |
RefSeq | NP_001152243.1 | 0 | 27 | 377 | 29 | 403 | polygalacturonase [Zea mays] |
RefSeq | XP_002437276.1 | 0 | 19 | 377 | 21 | 404 | hypothetical protein SORBIDRAFT_10g024020 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-17 | 100 | 346 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 0.000000000001 | 98 | 365 | 74 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 0.000000000001 | 98 | 365 | 74 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 0.000000000001 | 98 | 365 | 74 | 336 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1nhc_F | 0.000000000003 | 173 | 365 | 152 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |