y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00034533m |
Family | AA5 |
Protein Properties | Length: 560 Molecular Weight: 60526.9 Isoelectric Point: 8.0744 |
Chromosome | Chromosome/Scaffold: 032679 Start: 2514 End: 4193 |
Description | glyoxal oxidase-related protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA5 | 22 | 558 | 0 |
PASAAGSWKFLGNVGVSGMHMQLLHNDRLILFDRTNVGPSNLTFPAGHPCRTNPQDLWFRNRTDCTAHSVEYNLASGTFRGLSIFTDTWCSSGHVAPDGT LVQNGGWRDGTRKIRLMPACSGSDASCDWTEEPAPVVLAADRWYATNQKLPDVNGRAIIVGGLGQPSYEFYPKAGANTASLLPFLGQTDSLYPFVHLNID GNLFIFAGNRAILFDYNAGKIVRNYTTLGNGGDLRTNPNAGSSVLLPLKPNPTEAEVLICGGTPATSNRAVAAGQFPPALSTCGRLKITDPNPSWVVEEM PSPRVMGDMILLPNGEVAIINGATDGIAGWESANTFNPTPVIYRPDLPFVTPTSRFEAQAPAGTPRPRMYHASAVLDRDGRVIVGGSNPHQFYVFDRKFP TDLTLEAFAPFYLDGSNDGLRPNIFVPSPKDGPVFVTYRAQLKLQFFVRDGVPGAVSMVPPSFTTHSFAQNQRQLFLQVEVKPATAFQLNGGVATPFPGF YEATVTMPASSVLAPPGYYMLFVVNGRIPSKGIWVHI |
Full Sequence |
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Protein Sequence Length: 560 Download |
MKLGRFHHLA LLLLLAYGSI APASAAGSWK FLGNVGVSGM HMQLLHNDRL ILFDRTNVGP 60 SNLTFPAGHP CRTNPQDLWF RNRTDCTAHS VEYNLASGTF RGLSIFTDTW CSSGHVAPDG 120 TLVQNGGWRD GTRKIRLMPA CSGSDASCDW TEEPAPVVLA ADRWYATNQK LPDVNGRAII 180 VGGLGQPSYE FYPKAGANTA SLLPFLGQTD SLYPFVHLNI DGNLFIFAGN RAILFDYNAG 240 KIVRNYTTLG NGGDLRTNPN AGSSVLLPLK PNPTEAEVLI CGGTPATSNR AVAAGQFPPA 300 LSTCGRLKIT DPNPSWVVEE MPSPRVMGDM ILLPNGEVAI INGATDGIAG WESANTFNPT 360 PVIYRPDLPF VTPTSRFEAQ APAGTPRPRM YHASAVLDRD GRVIVGGSNP HQFYVFDRKF 420 PTDLTLEAFA PFYLDGSNDG LRPNIFVPSP KDGPVFVTYR AQLKLQFFVR DGVPGAVSMV 480 PPSFTTHSFA QNQRQLFLQV EVKPATAFQL NGGVATPFPG FYEATVTMPA SSVLAPPGYY 540 MLFVVNGRIP SKGIWVHIQ* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam09118 | DUF1929 | 2.0e-18 | 448 | 558 | 112 | + Domain of unknown function (DUF1929). Members of this family adopt a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase. | ||
cd02851 | E_set_GO_C | 3.0e-21 | 438 | 558 | 122 | + C-terminal Early set domain associated with the catalytic domain of galactose oxidase. E or "early" set domains are associated with the catalytic domain of galactose oxidase at the C-terminal end. Galactose oxidase is an extracellular monomeric enzyme which catalyzes the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalyzing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminal domain of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. | ||
pfam07250 | Glyoxal_oxid_N | 8.0e-92 | 40 | 283 | 253 | + Glyoxal oxidase N-terminus. This family represents the N-terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyzes the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY89314.1 | 0 | 7 | 559 | 12 | 563 | hypothetical protein OsI_10817 [Oryza sativa Indica Group] |
RefSeq | NP_001049609.1 | 0 | 7 | 559 | 12 | 564 | Os03g0258900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001149941.1 | 0 | 20 | 559 | 31 | 577 | glyoxal oxidase [Zea mays] |
RefSeq | XP_002446737.1 | 0 | 1 | 559 | 1 | 563 | hypothetical protein SORBIDRAFT_06g021520 [Sorghum bicolor] |
RefSeq | XP_002468154.1 | 0 | 18 | 559 | 35 | 582 | hypothetical protein SORBIDRAFT_01g040550 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2eid_A | 0.00000003 | 108 | 546 | 225 | 624 | A Chain A, Galactose Oxidase W290g Mutant |
PDB | 2wq8_A | 0.0000001 | 108 | 546 | 247 | 646 | A Chain A, Glycan Labelling Using Engineered Variants Of Galactose Oxidase Obtained By Directed Evolution |
PDB | 2eic_A | 0.0000001 | 108 | 546 | 225 | 624 | A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f |
PDB | 2vz3_A | 0.0000001 | 108 | 546 | 225 | 624 | A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f |
PDB | 2vz1_A | 0.0000001 | 108 | 546 | 225 | 624 | A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f |