Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00034598m |
Family | AA1 |
Protein Properties | Length: 459 Molecular Weight: 49559.8 Isoelectric Point: 6.1811 |
Chromosome | Chromosome/Scaffold: 032168 Start: 482 End: 3729 |
Description | SKU5 similar 5 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA1 | 72 | 418 | 0 |
ADEFTVLIGDWYTTSHKALQDLLDSGKELPSPDGVLINGKRSPDGPDFNVEQGKTYRLRISNVGLQSTLNFLIQEHCMTAPVEVEGTHTVQNSYTSVDVH AGQSLCVLFTADRPARDYRVVVSTRFASATLRSTAVIRYAGSSGPAFEPLLPCPPGPATTTLISPSTRLAPSGTNTSSSGRRGSYHYGSINVTRTIRLAT SAGPAAGGGKLQYAVNGVSFAEADTPLKLADYFNISGVFRLGGIPDAPPPAATGEVRSETAVMDSDHRSFVEVVLENGEDCVQSWHLDGHSVFVVGMHVG TWSEQSRDGYNLVDVVSRCTVQVYPRGWTAVLVALDNVGMWNMRSEV |
Full Sequence |
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Protein Sequence Length: 459 Download |
GSVQIFRWDI TYGEISPLGV PQQGVLINGQ FPGPTLECQT NDNLIINVRN SLPDPFLLSC 60 RPLIPVPFPS PADEFTVLIG DWYTTSHKAL QDLLDSGKEL PSPDGVLING KRSPDGPDFN 120 VEQGKTYRLR ISNVGLQSTL NFLIQEHCMT APVEVEGTHT VQNSYTSVDV HAGQSLCVLF 180 TADRPARDYR VVVSTRFASA TLRSTAVIRY AGSSGPAFEP LLPCPPGPAT TTLISPSTRL 240 APSGTNTSSS GRRGSYHYGS INVTRTIRLA TSAGPAAGGG KLQYAVNGVS FAEADTPLKL 300 ADYFNISGVF RLGGIPDAPP PAATGEVRSE TAVMDSDHRS FVEVVLENGE DCVQSWHLDG 360 HSVFVVGMHV GTWSEQSRDG YNLVDVVSRC TVQVYPRGWT AVLVALDNVG MWNMRSEVWA 420 RRDLGQQVYL RVHTPTRSPR DELPIPDNAL LCGRAAGR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02354 | PLN02354 | 5.0e-19 | 6 | 59 | 54 | + copper ion binding / oxidoreductase | ||
PLN02835 | PLN02835 | 4.0e-140 | 61 | 458 | 398 | + oxidoreductase | ||
PLN02354 | PLN02354 | 2.0e-149 | 61 | 457 | 411 | + copper ion binding / oxidoreductase | ||
PLN02792 | PLN02792 | 2.0e-155 | 6 | 458 | 516 | + oxidoreductase | ||
PLN02991 | PLN02991 | 3.0e-172 | 4 | 457 | 528 | + oxidoreductase |
Gene Ontology | |
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GO Term | Description |
GO:0005507 | copper ion binding |
GO:0016491 | oxidoreductase activity |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAH67167.1 | 0 | 4 | 455 | 31 | 541 | H0211B05.4 [Oryza sativa (indica cultivar-group)] |
GenBank | EEC77800.1 | 0.000000000002 | 4 | 68 | 25 | 93 | hypothetical protein OsI_16980 [Oryza sativa Indica Group] |
GenBank | EEC77800.1 | 0 | 58 | 455 | 161 | 555 | hypothetical protein OsI_16980 [Oryza sativa Indica Group] |
RefSeq | NP_001053555.1 | 0 | 4 | 455 | 31 | 541 | Os04g0561900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002448327.1 | 0 | 1 | 454 | 22 | 559 | hypothetical protein SORBIDRAFT_06g025300 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1asq_B | 1e-22 | 74 | 456 | 136 | 542 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
PDB | 1asq_A | 1e-22 | 74 | 456 | 136 | 542 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
PDB | 1asp_B | 1e-22 | 74 | 456 | 136 | 542 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DR960450 | 293 | 161 | 451 | 0 |
DR798020 | 275 | 179 | 451 | 0 |
DR789545 | 274 | 180 | 451 | 0 |
DV533486 | 273 | 181 | 451 | 0 |
HO801725 | 403 | 61 | 458 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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