| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00034641m |
| Family | GT5 |
| Protein Properties | Length: 580 Molecular Weight: 64023.7 Isoelectric Point: 6.9573 |
| Chromosome | Chromosome/Scaffold: 032623 Start: 819 End: 6737 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 80 | 567 | 0 |
| IIFVATEVHPWCKTGGLGDVVGGLPPALAAMGHRVMTIAPRYDQYKDAWDTNVLVEVNVGDTVETVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGAKLYG PTTGTDYRDNQLRFCLLCLAALEAPRVLNLSNSEYFSGPYGEDVVFVANDWHTAVLPCYLKSMYKPNGIYANAKVAFCIHNIAYQGRFARADFEVLNLPD SFLPSFDFIDGHVKPVLGRKINWMKAGIIESDLVLTVSPHYVKELTSGPDKGVELDGVLRTKPLETGIVNGMDVYEWDPSTDKYISVKYDATTVTEARAL NKERLQAEVGLPVDSNIPVIVFVGRLEEQKGSDILISAIPEFVGENVQIIVLGTGKKKMEEELTLLEVKYPNNARGIAKFNVPLAHMMFAGADFIIVPSR FEPCGLIQLQGMRYGVIPICSSTGGLVDTVKEGVTGFHMGSFNVECETVDPADVAAVASTVTRALEQYDTPAFHEMIQNCMVQDLSWK | |||
| Full Sequence |
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| Protein Sequence Length: 580 Download |
| MAATMGSISA YGSYQTNRPI ALKQTPHMQF QQCCRGGVRF LSNHSQSMRS KTQLSKRRAT 60 NRPKTTRSQA PIVCSTGMTI IFVATEVHPW CKTGGLGDVV GGLPPALAAM GHRVMTIAPR 120 YDQYKDAWDT NVLVEVNVGD TVETVRFFHC YKRGVDRVFV DHPMFLEKVW GKTGAKLYGP 180 TTGTDYRDNQ LRFCLLCLAA LEAPRVLNLS NSEYFSGPYG EDVVFVANDW HTAVLPCYLK 240 SMYKPNGIYA NAKVAFCIHN IAYQGRFARA DFEVLNLPDS FLPSFDFIDG HVKPVLGRKI 300 NWMKAGIIES DLVLTVSPHY VKELTSGPDK GVELDGVLRT KPLETGIVNG MDVYEWDPST 360 DKYISVKYDA TTVTEARALN KERLQAEVGL PVDSNIPVIV FVGRLEEQKG SDILISAIPE 420 FVGENVQIIV LGTGKKKMEE ELTLLEVKYP NNARGIAKFN VPLAHMMFAG ADFIIVPSRF 480 EPCGLIQLQG MRYGVIPICS STGGLVDTVK EGVTGFHMGS FNVECETVDP ADVAAVASTV 540 TRALEQYDTP AFHEMIQNCM VQDLSWKVGT DAKFFVCLT* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 4.0e-76 | 76 | 567 | 511 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 4.0e-100 | 78 | 566 | 506 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 2.0e-127 | 78 | 566 | 500 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 2.0e-158 | 80 | 567 | 501 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| TIGR02095 | glgA | 6.0e-170 | 78 | 568 | 498 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG43100.1 | 0 | 1 | 567 | 1 | 570 | granule-bound starch synthase 1b [Zea mays] |
| GenBank | ACL54413.1 | 0 | 1 | 567 | 1 | 570 | unknown [Zea mays] |
| GenBank | ACY56072.1 | 0 | 1 | 567 | 1 | 570 | granule-bound starch synthase II [Oryza sativa Japonica Group] |
| RefSeq | NP_001106039.1 | 0 | 1 | 567 | 1 | 570 | granule bound starch synthase IIa precursor [Zea mays] |
| RefSeq | XP_002461889.1 | 0 | 1 | 567 | 1 | 569 | hypothetical protein SORBIDRAFT_02g009870 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 78 | 567 | 10 | 498 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3vue_A | 0 | 78 | 567 | 10 | 498 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 78 | 572 | 1 | 468 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 78 | 572 | 1 | 468 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 78 | 572 | 1 | 468 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| AJ568414 | 545 | 28 | 567 | 0 |
| HO825853 | 482 | 86 | 567 | 0 |
| HO629148 | 526 | 45 | 567 | 0 |
| CX101131 | 333 | 235 | 567 | 0 |
| JG904678 | 272 | 138 | 409 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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