Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00034646m |
Family | CBM43 |
Protein Properties | Length: 410 Molecular Weight: 42994.6 Isoelectric Point: 5.4761 |
Chromosome | Chromosome/Scaffold: 0326909 Start: 72 End: 1353 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 293 | 378 | 3e-25 |
WCVLNPDAAGDDAAGRVADNVGYACGRADCTALGYGCSCGGALDARGNASYAFNAYYQAQGQAEAACDFQGLAVVVDEDASRGKCN | |||
GH17 | 4 | 284 | 0 |
LAGTGIETMVAVPNDLLAAVADYGRAREWVRENVTRYAFDGGVDVRFVAVGNEPFLRAYGGAFDRVTVPALRNIQRALDEAGHGGRVKATVPVNADVYDS PPGDPVPSAGRFRADVAGVMAEVVRFLNRSGAPLTVNIYLFLSLYGNDGFPLDYAFFDGGGGGGGKAKPVVDGRVTYTNVFDANFDTLVSALRRVGLGHL PVMIGEVGWPTDGDRHATPALAERFYAGLLRRLAAGKGTPLRPGARIEAYLFGLIDEDAKSVAPGNFERHWGLFTFDGRPK |
Full Sequence |
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Protein Sequence Length: 410 Download |
MAGLAGTGIE TMVAVPNDLL AAVADYGRAR EWVRENVTRY AFDGGVDVRF VAVGNEPFLR 60 AYGGAFDRVT VPALRNIQRA LDEAGHGGRV KATVPVNADV YDSPPGDPVP SAGRFRADVA 120 GVMAEVVRFL NRSGAPLTVN IYLFLSLYGN DGFPLDYAFF DGGGGGGGKA KPVVDGRVTY 180 TNVFDANFDT LVSALRRVGL GHLPVMIGEV GWPTDGDRHA TPALAERFYA GLLRRLAAGK 240 GTPLRPGARI EAYLFGLIDE DAKSVAPGNF ERHWGLFTFD GRPKGVEYLP RRWCVLNPDA 300 AGDDAAGRVA DNVGYACGRA DCTALGYGCS CGGALDARGN ASYAFNAYYQ AQGQAEAACD 360 FQGLAVVVDE DASRGKCNFS VQVVGSGAPA PVAMARTAAV LAALLLVLL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 4.0e-5 | 181 | 280 | 107 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 4.0e-9 | 292 | 366 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-18 | 293 | 379 | 88 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 8.0e-59 | 4 | 284 | 283 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG41694.1 | 0 | 1 | 387 | 67 | 463 | glucan endo-1,3-beta-glucosidase 5 precursor [Zea mays] |
GenBank | ACN32122.1 | 0 | 1 | 387 | 66 | 503 | unknown [Zea mays] |
GenBank | EAY81406.1 | 0 | 1 | 380 | 68 | 461 | hypothetical protein OsI_36575 [Oryza sativa Indica Group] |
RefSeq | NP_001140660.1 | 0 | 1 | 387 | 66 | 462 | hypothetical protein LOC100272735 [Zea mays] |
RefSeq | XP_002449743.1 | 0 | 1 | 389 | 65 | 475 | hypothetical protein SORBIDRAFT_05g022490 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 6e-40 | 4 | 284 | 45 | 309 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 3ur8_A | 6e-40 | 4 | 284 | 45 | 309 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 3ur7_B | 6e-40 | 4 | 284 | 45 | 309 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 6e-40 | 4 | 284 | 45 | 309 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3f55_D | 1e-39 | 1 | 297 | 41 | 312 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CA298168 | 226 | 57 | 282 | 0 |
HO797198 | 400 | 1 | 383 | 0 |
DR949007 | 262 | 23 | 284 | 0 |
DV031305 | 221 | 1 | 221 | 0 |
EX345626 | 323 | 40 | 344 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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