Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00034723m |
Family | GH28 |
Protein Properties | Length: 458 Molecular Weight: 49100.6 Isoelectric Point: 7.023 |
Chromosome | Chromosome/Scaffold: 032209 Start: 1026 End: 4682 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 73 | 422 | 0 |
ADKGGAQLYVPKGRWLTGSFNLTSHLTLFLESGAVIVGTQEVSQWPVAEPLPSYGRGMDLPGLRHRSLINGLNLTDVVITGNNGIIDGQGSTWWNWFRSN KLNYSRPHLVEFVDSEQIVISNITFLNSPAWSIHPVYCRNVVLYNITIQTSLDAPLNHGIVPDSSSNMCIEDSNISVSHDAISLKSGWDNYGITFGRPTS DIHIRRVNLQSPLGAALAFGSEMSGGISDIHADHLRIHGSSKGIFFKTAQGRGGYIRDTVISDVQMEDVNVAIAFTGSWSSHPDDHFDPAALPLINRITL KNMTGTKISVAGVLSGITGDPFTGICLSNINFSLADSANSTSWSCSNVSG |
Full Sequence |
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Protein Sequence Length: 458 Download |
MARLVALALA VAVAVGVLVI ARVEAEPRCA RRGRSAPPRP HSVTITEFGA VGDGVTLNTV 60 PFQNAVFYVR SFADKGGAQL YVPKGRWLTG SFNLTSHLTL FLESGAVIVG TQEVSQWPVA 120 EPLPSYGRGM DLPGLRHRSL INGLNLTDVV ITGNNGIIDG QGSTWWNWFR SNKLNYSRPH 180 LVEFVDSEQI VISNITFLNS PAWSIHPVYC RNVVLYNITI QTSLDAPLNH GIVPDSSSNM 240 CIEDSNISVS HDAISLKSGW DNYGITFGRP TSDIHIRRVN LQSPLGAALA FGSEMSGGIS 300 DIHADHLRIH GSSKGIFFKT AQGRGGYIRD TVISDVQMED VNVAIAFTGS WSSHPDDHFD 360 PAALPLINRI TLKNMTGTKI SVAGVLSGIT GDPFTGICLS NINFSLADSA NSTSWSCSNV 420 SGYSKLVLPE PCLDLRTTPS NSSICSALPS YHAIAVA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 5.0e-20 | 41 | 432 | 412 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 3.0e-20 | 41 | 437 | 421 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 4.0e-21 | 141 | 420 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-23 | 40 | 403 | 375 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 8.0e-43 | 43 | 410 | 398 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA99544.2 | 0 | 41 | 457 | 41 | 457 | glycoside hydrolase family 28 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | EEC68574.1 | 0 | 34 | 456 | 25 | 448 | hypothetical protein OsI_36908 [Oryza sativa Indica Group] |
RefSeq | NP_001066993.1 | 0 | 34 | 457 | 1 | 424 | Os12g0554800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001068399.1 | 0 | 34 | 456 | 25 | 448 | Os11g0658800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001148987.1 | 0 | 1 | 452 | 1 | 451 | polygalacturonase [Zea mays] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 7e-34 | 21 | 401 | 8 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 7e-34 | 21 | 401 | 8 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 7e-34 | 21 | 401 | 8 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 7e-34 | 21 | 401 | 8 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000007 | 87 | 421 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |