Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00034737m |
Family | AA7 |
Protein Properties | Length: 439 Molecular Weight: 47403.2 Isoelectric Point: 11.6607 |
Chromosome | Chromosome/Scaffold: 0322638 Start: 64 End: 1380 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 26 | 261 | 0 |
NTTVRPLCIVTASGVPHVQAAVRCGRAHGVRLRVRSGGHEYEGLSYRSVRPEVFAVLDLARLRGVRVVPGEASAWVDAGTTLGELYYAVGTANPGFLFPG GVCATVGVSGFISGGGIGLMMRKHGVGGDNVLDARIVNADGDVLDRAAMGEDLFWAIRGGGGESFGVVVAWRLKLSRVPPTVTVVNNLRTMEQGVADLLA KWETTILAPSLPADLTIRVVLQERHALFQTLYLGRC |
Full Sequence |
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Protein Sequence Length: 439 Download |
LVYQQSSSGF TSVLESSVQN PKFLTNTTVR PLCIVTASGV PHVQAAVRCG RAHGVRLRVR 60 SGGHEYEGLS YRSVRPEVFA VLDLARLRGV RVVPGEASAW VDAGTTLGEL YYAVGTANPG 120 FLFPGGVCAT VGVSGFISGG GIGLMMRKHG VGGDNVLDAR IVNADGDVLD RAAMGEDLFW 180 AIRGGGGESF GVVVAWRLKL SRVPPTVTVV NNLRTMEQGV ADLLAKWETT ILAPSLPADL 240 TIRVVLQERH ALFQTLYLGR CSDLLRTVGI FFPELGMTAA DCNEMSWLRA MAFIYFGNTG 300 TPARAPQPDQ LPGHLLQEQV RLRAPRRRPG RVGGPVRAAA LPERQHAHGP GAARRRGRRR 360 QHERHLAAPA PPGRVVQHPV RVHVVGRGQR HRRRRRRSGG STASTGSWGS TRPATPREAF 420 ANYRDLDLGQ NVVGGTACR |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam01565 | FAD_binding_4 | 1.0e-16 | 31 | 170 | 141 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
COG0277 | GlcD | 2.0e-18 | 28 | 240 | 232 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA93766.1 | 0 | 2 | 436 | 53 | 493 | Reticuline oxidase precursor, putative [Oryza sativa (japonica cultivar-group)] |
GenBank | EAY80999.1 | 0 | 2 | 435 | 53 | 492 | hypothetical protein OsI_36182 [Oryza sativa Indica Group] |
GenBank | EAZ01289.1 | 0 | 1 | 435 | 47 | 476 | hypothetical protein OsI_23318 [Oryza sativa Indica Group] |
RefSeq | NP_001067934.1 | 0 | 2 | 435 | 53 | 492 | Os11g0495700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002438541.1 | 0 | 1 | 433 | 46 | 476 | hypothetical protein SORBIDRAFT_10g021685 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3tsj_B | 0 | 1 | 433 | 23 | 449 | A Chain A, Crystal Structure Of Human Glcat-P Apo Form |
PDB | 3tsj_A | 0 | 1 | 433 | 23 | 449 | A Chain A, Crystal Structure Of Human Glcat-P Apo Form |
PDB | 3tsh_A | 0 | 1 | 433 | 23 | 449 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
PDB | 4dns_B | 0 | 2 | 301 | 26 | 323 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CX611588 | 211 | 1 | 211 | 0 |
GO842657 | 269 | 1 | 269 | 0 |
CF427800 | 183 | 1 | 183 | 0 |
FL915331 | 250 | 8 | 254 | 0 |
GR348051 | 249 | 53 | 301 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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