y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00034775m |
Family | AA3 |
Protein Properties | Length: 582 Molecular Weight: 63017.3 Isoelectric Point: 7.1705 |
Chromosome | Chromosome/Scaffold: 032414 Start: 3167 End: 5576 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 42 | 561 | 0 |
QAANVSYYDYIIVGGGTAGCPLAATLSERFRVLLLERGGSPYGDERVEDMTRFTNTLADTSPGSPVQRFVSEDGVINSRPRVLGGGSCINAGFYTRASDD YVRRAGWDLEATGAAYRWVEDVVAFHPELGPWQAALQGGLLESGITPDNGFTFDHLDGTKVGGSIFDADGRRHTAADLLRYARADGLDVLLWARVAKILF NVRGRRPVARGVVFHDSKGRMHKAYLNAGRGNEIILSAGALGSPQLLMLSGVGPADHLRSFGITLVHDQPGVGQGMADNPMNAIYVPSPSPVEISLIQVV GITQVGSYIEGSSGARHSASARNFGMFSPQTGQLATVPPKQRTPEAIARAAETMRQLDDSAFRGGFILEKILGPLSTGHLELRNRNPDDNPSVKFNYFSH PEDLRRCVAGLSVIERVIQSKAFENFTYPTFSMETLLNMSTGFPVNLLPRHDNDTTSLEQFCRDTVMTIWHYHGGCQVGRVVDTEYRVLGVDALRVIDGS TFNASPGTNPQATVMMLGRY |
Full Sequence |
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Protein Sequence Length: 582 Download |
MAANRFFARE LATSVAATFF ALMCSSPQVR GVDYAFMKDA TQAANVSYYD YIIVGGGTAG 60 CPLAATLSER FRVLLLERGG SPYGDERVED MTRFTNTLAD TSPGSPVQRF VSEDGVINSR 120 PRVLGGGSCI NAGFYTRASD DYVRRAGWDL EATGAAYRWV EDVVAFHPEL GPWQAALQGG 180 LLESGITPDN GFTFDHLDGT KVGGSIFDAD GRRHTAADLL RYARADGLDV LLWARVAKIL 240 FNVRGRRPVA RGVVFHDSKG RMHKAYLNAG RGNEIILSAG ALGSPQLLML SGVGPADHLR 300 SFGITLVHDQ PGVGQGMADN PMNAIYVPSP SPVEISLIQV VGITQVGSYI EGSSGARHSA 360 SARNFGMFSP QTGQLATVPP KQRTPEAIAR AAETMRQLDD SAFRGGFILE KILGPLSTGH 420 LELRNRNPDD NPSVKFNYFS HPEDLRRCVA GLSVIERVIQ SKAFENFTYP TFSMETLLNM 480 STGFPVNLLP RHDNDTTSLE QFCRDTVMTI WHYHGGCQVG RVVDTEYRVL GVDALRVIDG 540 STFNASPGTN PQATVMMLGR YMGLKIQSGR LKAEGSEGTK L* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 4.0e-15 | 415 | 559 | 150 | + choline dehydrogenase; Validated | ||
pfam05199 | GMC_oxred_C | 5.0e-27 | 415 | 559 | 151 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
PRK02106 | PRK02106 | 3.0e-31 | 49 | 319 | 322 | + choline dehydrogenase; Validated | ||
COG2303 | BetA | 2.0e-47 | 49 | 560 | 557 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 4 | 575 | 576 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY87068.1 | 0 | 11 | 576 | 1 | 579 | hypothetical protein OsI_08464 [Oryza sativa Indica Group] |
RefSeq | NP_001053612.1 | 0 | 1 | 575 | 1 | 585 | Os04g0573100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001146691.1 | 0 | 11 | 580 | 14 | 598 | hypothetical protein LOC100280292 [Zea mays] |
RefSeq | XP_002446965.1 | 0 | 1 | 581 | 1 | 595 | hypothetical protein SORBIDRAFT_06g025960 [Sorghum bicolor] |
RefSeq | XP_002454481.1 | 0 | 1 | 574 | 1 | 583 | hypothetical protein SORBIDRAFT_04g031910 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ju2_B | 0 | 35 | 570 | 13 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 1ju2_A | 0 | 35 | 570 | 13 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_B | 0 | 35 | 570 | 13 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_A | 0 | 35 | 570 | 13 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdn_B | 0 | 35 | 570 | 13 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |