Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00034785m |
Family | GH17 |
Protein Properties | Length: 392 Molecular Weight: 43798.5 Isoelectric Point: 7.315 |
Chromosome | Chromosome/Scaffold: 032199 Start: 2232 End: 5211 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 33 | 349 | 0 |
GINYGRIANNIPSPDKVVELLRKSKIRNVKIYDSDHSVLDAFKGSGLNLVIAIPNELVKDMAANESRSMDWLNQNVKPYLPQTRIVGITVGNEVLGGQDQ SLYQPLVDALKNVYNGLKKLHLEKEIELFTPHSEAVFATTYPPSACVFKEELMPYMKPLLDFFAMIHSPFYVNAYPFLAYISDPEHIDINYALFKPNNGI VDPNTSLHYDNMFDAQIDAAYAALHAAGYDDMEVRVAETGWASSGDQNEAGASSENARTYNFNLRKRLFLRKGTPLKPKRPVKAYIFALFNENQKFGPGS ERHYGLFLPDGRISYDI |
Full Sequence |
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Protein Sequence Length: 392 Download |
MMVPRMLLLL CFFLLAFPSP GLLAVEAFVG GYGINYGRIA NNIPSPDKVV ELLRKSKIRN 60 VKIYDSDHSV LDAFKGSGLN LVIAIPNELV KDMAANESRS MDWLNQNVKP YLPQTRIVGI 120 TVGNEVLGGQ DQSLYQPLVD ALKNVYNGLK KLHLEKEIEL FTPHSEAVFA TTYPPSACVF 180 KEELMPYMKP LLDFFAMIHS PFYVNAYPFL AYISDPEHID INYALFKPNN GIVDPNTSLH 240 YDNMFDAQID AAYAALHAAG YDDMEVRVAE TGWASSGDQN EAGASSENAR TYNFNLRKRL 300 FLRKGTPLKP KRPVKAYIFA LFNENQKFGP GSERHYGLFL PDGRISYDIG ISGLLPSSAS 360 SSMLSMKKIR AGGWILHYLA TVLLYIFIFW P* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.003 | 266 | 339 | 78 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam00332 | Glyco_hydro_17 | 7.0e-81 | 33 | 349 | 317 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF33176.1 | 0 | 26 | 389 | 37 | 399 | beta-1,3-glucanase [Triticum aestivum] |
GenBank | ACG42425.1 | 0 | 2 | 389 | 1 | 388 | hypothetical protein [Zea mays] |
RefSeq | NP_001058028.1 | 0 | 16 | 372 | 55 | 411 | Os06g0607000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001130934.1 | 0 | 2 | 389 | 1 | 388 | hypothetical protein LOC100192039 [Zea mays] |
RefSeq | XP_002437258.1 | 0 | 1 | 370 | 1 | 370 | hypothetical protein SORBIDRAFT_10g023710 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 33 | 349 | 2 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0 | 33 | 349 | 2 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 33 | 349 | 2 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_D | 0 | 33 | 352 | 3 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_C | 0 | 33 | 352 | 3 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |