Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00034812m |
Family | GT47 |
Protein Properties | Length: 607 Molecular Weight: 66784.3 Isoelectric Point: 6.6878 |
Chromosome | Chromosome/Scaffold: 032869 Start: 3623 End: 5443 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 171 | 515 | 0 |
GQYIYVQHLPARFNKDMVHNCDRLSPWTDMCRCTTNGGFGPLLRGGKGALQGAGTGWYDTDEHALDIIFHERIKRYECLTDDPSLAAAVFVPFYAGLDVA RHLWGNNVSARDELALDLAGLLAERPEWCAMGGRDHFFVAGRTTWDFRRKADGGQSEWGSKLLNLPAARNMTALVVEASPWHLNDVAVPYPTAFHPASDE DLFFWQDRVRALNRTYLFSFAGIARPGDARSIEGHLVDQCKASPTACSLMECSTTGPDNKCESPATVMELFQSSTFCLLPRGGTDTRRPAFDAVLAGCIP VFFHPSSAYVQYSWFLPKSHADYSVYIPEEDVRKNASVEERLRKV |
Full Sequence |
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Protein Sequence Length: 607 Download |
MKRHNAGELP LSSAPAPAGD GIERVAEDKM DKYDKGRIRC SRLCFLFALA ATVSILARHC 60 YDARGGNAGV VRIEAVRAPP PPSVHHERKI VPIARRESLA SDRSPSAPAD AVDGASWKPS 120 ASESAQPADN GDKTPTKEKG SPSASHGSKY GGHPFARALA AADNKDDLCG GQYIYVQHLP 180 ARFNKDMVHN CDRLSPWTDM CRCTTNGGFG PLLRGGKGAL QGAGTGWYDT DEHALDIIFH 240 ERIKRYECLT DDPSLAAAVF VPFYAGLDVA RHLWGNNVSA RDELALDLAG LLAERPEWCA 300 MGGRDHFFVA GRTTWDFRRK ADGGQSEWGS KLLNLPAARN MTALVVEASP WHLNDVAVPY 360 PTAFHPASDE DLFFWQDRVR ALNRTYLFSF AGIARPGDAR SIEGHLVDQC KASPTACSLM 420 ECSTTGPDNK CESPATVMEL FQSSTFCLLP RGGTDTRRPA FDAVLAGCIP VFFHPSSAYV 480 QYSWFLPKSH ADYSVYIPEE DVRKNASVEE RLRKVSPEML RAMRDTVVGL IPSVTYSDMT 540 SRLETTVKDA FDIAVAAVIN KVTKLRRGIA EGRPEEEKQE RYSWKYPLLE EGQKPEDPHE 600 WDPLFN* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam03016 | Exostosin | 2.0e-53 | 227 | 515 | 304 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM93699.1 | 0 | 40 | 605 | 15 | 595 | hypothetical protein [Oryza sativa Japonica Group] |
GenBank | EEC67107.1 | 0 | 1 | 605 | 1 | 614 | hypothetical protein OsI_33904 [Oryza sativa Indica Group] |
GenBank | EEE51089.1 | 0 | 1 | 605 | 1 | 583 | hypothetical protein OsJ_31792 [Oryza sativa Japonica Group] |
RefSeq | NP_001064771.1 | 0 | 1 | 605 | 1 | 617 | Os10g0459700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002464523.1 | 0 | 1 | 606 | 1 | 613 | hypothetical protein SORBIDRAFT_01g020070 [Sorghum bicolor] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES833008 | 284 | 325 | 606 | 0 |
JG636298 | 264 | 242 | 505 | 0 |
CX076275 | 265 | 245 | 508 | 0 |
CF668912 | 272 | 296 | 566 | 0 |
CX667961 | 275 | 314 | 586 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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