Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00035134m |
Family | GH28 |
Protein Properties | Length: 409 Molecular Weight: 42764 Isoelectric Point: 9.3175 |
Chromosome | Chromosome/Scaffold: 092142 Start: 687 End: 2228 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 58 | 395 | 0 |
KACATPGRPAVVVPGGGGSYLLHPLVFRGPCRGYMEVRVAGVLRAPAGLGAFRGCREWVHFSNVDGLVVTGGGTFDGRGATAWPLNECPKRRDCTLLPTS IKLGRVRNATITDVTSLDSKFFHVTVAGSQGVRIHRVSIRAPRDSPNTDGVHIQGSSDVRVTDSAVATGDDCVSVGPGSSDVLVSGVTCGPGHGISVGSL GRYPGEEDVRRLRVANCTIAGTSNGVRIKTWRGGSRATAVAGLVFEDIVMRKVRNPIIIDQEYCPYASCRRESEQRPSAVRISDVKFRNIRGVSATQVAV KLSCSEASPCRGLELRDIDLRFVRRGVATQSQCAHVAG |
Full Sequence |
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Protein Sequence Length: 409 Download |
MASGLGALLL LLAMAAAWLA ADVVAGAAVG PVFNVTDFGA VADGKTDDSR AFLRAWMKAC 60 ATPGRPAVVV PGGGGSYLLH PLVFRGPCRG YMEVRVAGVL RAPAGLGAFR GCREWVHFSN 120 VDGLVVTGGG TFDGRGATAW PLNECPKRRD CTLLPTSIKL GRVRNATITD VTSLDSKFFH 180 VTVAGSQGVR IHRVSIRAPR DSPNTDGVHI QGSSDVRVTD SAVATGDDCV SVGPGSSDVL 240 VSGVTCGPGH GISVGSLGRY PGEEDVRRLR VANCTIAGTS NGVRIKTWRG GSRATAVAGL 300 VFEDIVMRKV RNPIIIDQEY CPYASCRRES EQRPSAVRIS DVKFRNIRGV SATQVAVKLS 360 CSEASPCRGL ELRDIDLRFV RRGVATQSQC AHVAGGVVGG TLVPPSCI* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN03010 | PLN03010 | 9.0e-85 | 33 | 395 | 366 | + polygalacturonase |
PLN02218 | PLN02218 | 5.0e-86 | 34 | 378 | 349 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 3.0e-88 | 33 | 407 | 379 | + Probable polygalacturonase |
pfam00295 | Glyco_hydro_28 | 2.0e-95 | 77 | 377 | 301 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02188 | PLN02188 | 6.0e-138 | 33 | 407 | 375 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN85236.1 | 0 | 1 | 408 | 1 | 412 | polygalacturonase precursor [Oryza minuta] |
GenBank | ACN85327.1 | 0 | 5 | 408 | 6 | 405 | polygalacturonase precursor [Oryza brachyantha] |
GenBank | EAZ37619.1 | 0 | 14 | 408 | 8 | 415 | hypothetical protein OsJ_21954 [Oryza sativa Japonica Group] |
RefSeq | NP_001152243.1 | 0 | 32 | 408 | 29 | 403 | polygalacturonase [Zea mays] |
RefSeq | XP_002437276.1 | 0 | 16 | 408 | 18 | 404 | hypothetical protein SORBIDRAFT_10g024020 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-20 | 110 | 377 | 97 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 0.00000000000005 | 34 | 375 | 22 | 336 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_B | 0.0000000000003 | 111 | 396 | 58 | 336 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_A | 0.0000000000003 | 111 | 396 | 58 | 336 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ia5_A | 0.0000000000003 | 111 | 396 | 58 | 336 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |