Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00035440m |
Family | GH3 |
Protein Properties | Length: 621 Molecular Weight: 66880.3 Isoelectric Point: 6.06 |
Chromosome | Chromosome/Scaffold: 093392 Start: 1496 End: 3893 |
Description | beta-xylosidase 2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 99 | 356 | 0 |
GAPRVGLPPYKWWSEALHGLSSTGPTTLFDDLRSRPGNHSGRATVNNGTVFANVINSAASFNETLWKAIGQGGLTYWSPNINVVRDPRWGRALETPGEDP FVAGRYAVNFVRGMQDIPGHGDGGGAGDPHARPIKTAACCKHFAAYDVDDWHNHTRFTFDARISERDMAESFLRSFEMCVREGDASSVMCSYNSVNGVPA CADARLLSGTVRGDWQLHGYIVSDCDAVRVMTDNATWLNFTGADSSAAAVRAGLDLDC |
Full Sequence |
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Protein Sequence Length: 621 Download |
MASHLLLILA ASLLCGTIPV DCSSRTTAAA AATTTVNVTA FGKAYGKVCD ADRFAELGLN 60 MSAFPYCDAS LPYAERVRDL IGWMTVEEKV GNLGDVSRGA PRVGLPPYKW WSEALHGLSS 120 TGPTTLFDDL RSRPGNHSGR ATVNNGTVFA NVINSAASFN ETLWKAIGQG GLTYWSPNIN 180 VVRDPRWGRA LETPGEDPFV AGRYAVNFVR GMQDIPGHGD GGGAGDPHAR PIKTAACCKH 240 FAAYDVDDWH NHTRFTFDAR ISERDMAESF LRSFEMCVRE GDASSVMCSY NSVNGVPACA 300 DARLLSGTVR GDWQLHGYIV SDCDAVRVMT DNATWLNFTG ADSSAAAVRA GLDLDCGESW 360 IEEGGRPLRD FLSVYGVAAV AQGKMRESDV DNALTNQYMT LMRLGYFDNI PQYAALNETD 420 ICTGEHKGLA LDGARQGIVL LKNRGNLLPL DAKKILAVAV HGPHARAPEK VMDGDYTGPP 480 CRAKTTIYFG GINLHIEREG NDREDILLPK NQTKEIRHFA AASPNPIILV ILSGGGIDIS 540 FAQNHPKIGA ILWAGYPGGE GGNAIADVIF GRYNPDPHDF HGVPAGAGAG VPGRTYKFYD 600 GPEVLYPSGY GLSYTKFLYE T |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK15098 | PRK15098 | 2.0e-28 | 77 | 472 | 442 | + beta-D-glucoside glucohydrolase; Provisional | ||
pfam01915 | Glyco_hydro_3_C | 8.0e-32 | 438 | 615 | 227 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
COG1472 | BglX | 7.0e-42 | 84 | 477 | 425 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 3.0e-49 | 85 | 396 | 347 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PLN03080 | PLN03080 | 6.0e-174 | 62 | 620 | 632 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY81859.1 | 0 | 29 | 620 | 33 | 670 | hypothetical protein OsI_37025 [Oryza sativa Indica Group] |
RefSeq | NP_001068511.1 | 0 | 5 | 620 | 17 | 671 | Os11g0696400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001146482.1 | 0 | 38 | 621 | 52 | 689 | hypothetical protein LOC100280070 [Zea mays] |
RefSeq | XP_002437062.1 | 0 | 22 | 621 | 21 | 663 | hypothetical protein SORBIDRAFT_10g020500 [Sorghum bicolor] |
RefSeq | XP_002455502.1 | 0 | 38 | 621 | 40 | 678 | hypothetical protein SORBIDRAFT_03g012290 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2x41_A | 1e-30 | 75 | 619 | 2 | 605 | A Chain A, An Induced Fit Mechanism Regulates P53 Dna Binding Kinetics To Confer Sequence Specificity |
PDB | 2x40_A | 1e-30 | 75 | 619 | 2 | 605 | A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Glycerol |
PDB | 2x42_A | 8e-30 | 75 | 619 | 2 | 605 | A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Alpha-D-Glucose |
PDB | 3u48_B | 4e-26 | 175 | 465 | 128 | 390 | A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Alpha-D-Glucose |
PDB | 3u48_B | 0.00000004 | 499 | 619 | 488 | 624 | A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Alpha-D-Glucose |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |