y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00035711m |
Family | CE8 |
Protein Properties | Length: 195 Molecular Weight: 21423.9 Isoelectric Point: 5.9912 |
Chromosome | Chromosome/Scaffold: 097261 Start: 1808 End: 3819 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 8 | 188 | 0 |
ATGKQAVALRVSADNAAFVGCKFLGAQDTLYDHSGRHYYKECYIEGSVDFIFGNALSLYEDCHVHAIARDYGALTAQNRQSTLEDTGFSFVNCRVTGSGA LYLGRAWGSFSRVVFAYTYMDNIIIPRGWYNWGDPNREMTVFYGQYKCTGPGASYAGRVAWSHELTDDEAKPFISLSFIDG |
Full Sequence |
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Protein Sequence Length: 195 Download |
GAGAQPGATG KQAVALRVSA DNAAFVGCKF LGAQDTLYDH SGRHYYKECY IEGSVDFIFG 60 NALSLYEDCH VHAIARDYGA LTAQNRQSTL EDTGFSFVNC RVTGSGALYL GRAWGSFSRV 120 VFAYTYMDNI IIPRGWYNWG DPNREMTVFY GQYKCTGPGA SYAGRVAWSH ELTDDEAKPF 180 ISLSFIDGTE WVRL* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 6.0e-83 | 4 | 194 | 191 | + pectinesterase | ||
PLN02304 | PLN02304 | 3.0e-85 | 5 | 193 | 197 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 6.0e-89 | 6 | 191 | 188 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 9.0e-94 | 9 | 193 | 185 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 8.0e-156 | 6 | 194 | 189 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN26093.1 | 0 | 5 | 194 | 210 | 399 | unknown [Zea mays] |
GenBank | ACR36293.1 | 0 | 5 | 194 | 202 | 391 | unknown [Zea mays] |
GenBank | EEC79546.1 | 0 | 5 | 194 | 209 | 398 | hypothetical protein OsI_20666 [Oryza sativa Indica Group] |
RefSeq | NP_001044216.1 | 0 | 5 | 194 | 195 | 384 | Os01g0743200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002458469.1 | 0 | 5 | 194 | 213 | 402 | hypothetical protein SORBIDRAFT_03g034250 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2e-39 | 7 | 193 | 108 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-37 | 7 | 193 | 104 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.000000000000003 | 12 | 181 | 155 | 357 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.00000000006 | 12 | 180 | 129 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.00000000006 | 12 | 180 | 129 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CN124984 | 191 | 5 | 195 | 0 |
CD233140 | 191 | 5 | 195 | 0 |
FL858054 | 191 | 5 | 195 | 0 |
CN126747 | 191 | 5 | 195 | 0 |
DY238148 | 181 | 15 | 195 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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