| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00035719m |
| Family | GH51 |
| Protein Properties | Length: 296 Molecular Weight: 32357.2 Isoelectric Point: 5.2905 |
| Chromosome | Chromosome/Scaffold: 090525 Start: 792 End: 3374 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH51 | 2 | 286 | 0 |
| GHPEPFPVKYVAIGNEDCGKKFYRGNYLKFYNAIRQAYPDIQMISNCDGSSRPLDHPADLYDFHVYTDSKTLFNMKSTFDSTSRSGPKAFVSEYAVWRSD AGRGSLLASLAEAAFLTGLEKNSDIVQMASYAPLFVNDNDRTWNPDAIVFNSWQHYGTPSYWMQTLFRESSGAMIHPITVSSNYSGSLAASAITWQDSEN SFLRVKVVNFGSDAISLTISTSGLQASVNALGSTTTVLTSGNVMDENSFSNPNKVVPVKRELSNAAEQMQVTLAPHSVSAFDLAL | |||
| Full Sequence |
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| Protein Sequence Length: 296 Download |
| MGHPEPFPVK YVAIGNEDCG KKFYRGNYLK FYNAIRQAYP DIQMISNCDG SSRPLDHPAD 60 LYDFHVYTDS KTLFNMKSTF DSTSRSGPKA FVSEYAVWRS DAGRGSLLAS LAEAAFLTGL 120 EKNSDIVQMA SYAPLFVNDN DRTWNPDAIV FNSWQHYGTP SYWMQTLFRE SSGAMIHPIT 180 VSSNYSGSLA ASAITWQDSE NSFLRVKVVN FGSDAISLTI STSGLQASVN ALGSTTTVLT 240 SGNVMDENSF SNPNKVVPVK RELSNAAEQM QVTLAPHSVS AFDLALAQSN LIAEM* 300 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3534 | AbfA | 3.0e-8 | 2 | 280 | 355 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| pfam06964 | Alpha-L-AF_C | 1.0e-37 | 93 | 278 | 203 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| smart00813 | Alpha-L-AF_C | 5.0e-51 | 93 | 278 | 198 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF86832.2 | 0 | 1 | 295 | 136 | 430 | unknown [Zea mays] |
| GenBank | ACN27961.1 | 0 | 1 | 295 | 362 | 656 | unknown [Zea mays] |
| GenBank | ACN33779.1 | 0 | 1 | 295 | 386 | 680 | unknown [Zea mays] |
| RefSeq | NP_001148977.1 | 0 | 1 | 295 | 386 | 680 | alpha-N-arabinofuranosidase A [Zea mays] |
| RefSeq | XP_002442705.1 | 0 | 1 | 295 | 362 | 656 | hypothetical protein SORBIDRAFT_08g001540 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s2c_L | 0.000000002 | 2 | 286 | 157 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_K | 0.000000002 | 2 | 286 | 157 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_J | 0.000000002 | 2 | 286 | 157 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_I | 0.000000002 | 2 | 286 | 157 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_H | 0.000000002 | 2 | 286 | 157 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| JG884880 | 286 | 11 | 296 | 0 |
| JG968114 | 276 | 3 | 278 | 0 |
| JG891613 | 263 | 34 | 296 | 0 |
| JG957844 | 263 | 34 | 296 | 0 |
| JG955912 | 273 | 12 | 284 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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