Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00035750m |
Family | GH28 |
Protein Properties | Length: 334 Molecular Weight: 36566.4 Isoelectric Point: 6.7084 |
Chromosome | Chromosome/Scaffold: 092358 Start: 2020 End: 3797 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 22 | 306 | 0 |
GPRHISLIHGEGLNDVVVTGNNGTIDGQGEMWWEMWWNRTLNYTRGHLVELANSTNILISNITLRNSPFWTVHPVYSSNVVIKGLTILAPLNAPNTDGID PDSSSEVCIEDCYIESGDDLVAVKSGWDQYGISVGKPSTNIVIQRVSGTTPMCSGVGFGSEMSGGISNVLVRDLHVWNSAQAVRLKTDVGRGGYITNITI TKVTMEKVKVPIKFSRGADDHSDDNYDRTALPRISNVLISGIVGVDLQRAPMLEAVAGAVYEGICFRNVSLRGIRRQGRWHCESV |
Full Sequence |
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Protein Sequence Length: 334 Download |
DPEEWPLIAP LPSYRRGRER LGPRHISLIH GEGLNDVVVT GNNGTIDGQG EMWWEMWWNR 60 TLNYTRGHLV ELANSTNILI SNITLRNSPF WTVHPVYSSN VVIKGLTILA PLNAPNTDGI 120 DPDSSSEVCI EDCYIESGDD LVAVKSGWDQ YGISVGKPST NIVIQRVSGT TPMCSGVGFG 180 SEMSGGISNV LVRDLHVWNS AQAVRLKTDV GRGGYITNIT ITKVTMEKVK VPIKFSRGAD 240 DHSDDNYDRT ALPRISNVLI SGIVGVDLQR APMLEAVAGA VYEGICFRNV SLRGIRRQGR 300 WHCESVYGAA HGVFPAPCEE LRKNRSSSWC GFS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 3.0e-17 | 34 | 318 | 302 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 3.0e-18 | 43 | 270 | 236 | + polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-23 | 38 | 265 | 239 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-28 | 36 | 294 | 265 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 6.0e-44 | 27 | 243 | 225 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ05322.1 | 0 | 1 | 333 | 150 | 482 | hypothetical protein OsI_27527 [Oryza sativa Indica Group] |
GenBank | EAZ41253.1 | 0 | 1 | 333 | 150 | 482 | hypothetical protein OsJ_25761 [Oryza sativa Japonica Group] |
RefSeq | NP_001060796.1 | 0 | 1 | 333 | 150 | 482 | Os08g0107300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001148255.1 | 0 | 1 | 332 | 159 | 492 | polygalacturonase [Zea mays] |
RefSeq | XP_002443718.1 | 0 | 1 | 332 | 165 | 496 | hypothetical protein SORBIDRAFT_07g000740 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2e-31 | 63 | 296 | 186 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-31 | 63 | 296 | 186 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-31 | 63 | 296 | 186 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-31 | 63 | 296 | 186 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000000003 | 44 | 233 | 117 | 308 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL761876 | 226 | 1 | 226 | 0 |
FL991684 | 252 | 75 | 326 | 0 |
HX186729 | 243 | 78 | 320 | 0 |
HO798662 | 300 | 25 | 324 | 0 |
FL991684 | 43 | 292 | 334 | 0.00000000000005 |
Sequence Alignments (This image is cropped. Click for full image.) |
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