Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00036539m |
Family | GH28 |
Protein Properties | Length: 385 Molecular Weight: 41671.1 Isoelectric Point: 5.7879 |
Chromosome | Chromosome/Scaffold: 093234 Start: 988 End: 3066 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 10 | 336 | 0 |
AAACKVEASTVLIPSELEFVVGPISFSGPYCKPNILFQLDGTILAQTSTRVWGSGLLQWLEFTKLTGITIQGSGVINGRGQEWWTYSDPNGDDDDDAFRV ELDKMPQIKPTALRFYGSSNVTVTGITIVNSSQCHLKFDSCQGVMVHDLTISSPENSPNTDGIHLQNSREVNIHHTNMACGDDCVSIQTGCSDINIHNVN CGPGHGISIGGLGRYNTKACVSNVTVRDVNMFKTMNGVRIKTWQGGSGLVQGIRFSNIQVSEVQTPIIIDQFYCDKTTCRNQTSAVAVSGVQYENIRGTF TIKPAHFACSDNSPCSDITLTGIQLKP |
Full Sequence |
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Protein Sequence Length: 385 Download |
YTQAFEAAWA AACKVEASTV LIPSELEFVV GPISFSGPYC KPNILFQLDG TILAQTSTRV 60 WGSGLLQWLE FTKLTGITIQ GSGVINGRGQ EWWTYSDPNG DDDDDAFRVE LDKMPQIKPT 120 ALRFYGSSNV TVTGITIVNS SQCHLKFDSC QGVMVHDLTI SSPENSPNTD GIHLQNSREV 180 NIHHTNMACG DDCVSIQTGC SDINIHNVNC GPGHGISIGG LGRYNTKACV SNVTVRDVNM 240 FKTMNGVRIK TWQGGSGLVQ GIRFSNIQVS EVQTPIIIDQ FYCDKTTCRN QTSAVAVSGV 300 QYENIRGTFT IKPAHFACSD NSPCSDITLT GIQLKPVIVP QYHLYNPFCW QAFGALYTPT 360 VPPIPCLQIG KPAGNSVLSD GDLC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-59 | 19 | 335 | 321 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 9.0e-62 | 18 | 334 | 320 | + polygalacturonase | ||
PLN02218 | PLN02218 | 8.0e-62 | 19 | 335 | 320 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 6.0e-78 | 18 | 334 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 9.0e-84 | 18 | 367 | 353 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAT39158.1 | 0 | 2 | 384 | 150 | 571 | putative polygalacturonase [Oryza sativa Japonica Group] |
GenBank | EEC79746.1 | 0 | 2 | 384 | 150 | 534 | hypothetical protein OsI_21117 [Oryza sativa Indica Group] |
GenBank | EEE64806.1 | 0 | 2 | 384 | 150 | 534 | hypothetical protein OsJ_19662 [Oryza sativa Japonica Group] |
RefSeq | NP_001148771.1 | 0 | 2 | 384 | 159 | 541 | polygalacturonase [Zea mays] |
RefSeq | XP_002441571.1 | 0 | 2 | 384 | 155 | 537 | hypothetical protein SORBIDRAFT_09g029500 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-28 | 62 | 285 | 96 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 3e-21 | 77 | 334 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-21 | 77 | 334 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-21 | 77 | 334 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-21 | 77 | 334 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO844129 | 307 | 18 | 324 | 0 |
JG927574 | 282 | 83 | 364 | 0 |
JG881257 | 282 | 79 | 360 | 0 |
JG909911 | 240 | 145 | 384 | 0 |
ES800057 | 347 | 24 | 350 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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