y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00036597m |
Family | CE8 |
Protein Properties | Length: 437 Molecular Weight: 45932.3 Isoelectric Point: 9.4528 |
Chromosome | Chromosome/Scaffold: 092514 Start: 607 End: 3666 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 146 | 423 | 0 |
VVSPDGKGKFRTISEAVKAVPEKNKKRVILDICPGTYKEKVLVPYTKHFVTLLGNPKNPPVIMWDDRAATHGKDGKPVGIVGSATVAVESEASGIVFREG GQAVALRVFGNKAAFYECTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSLYEDCAIVSVTKQVAVLMQPTKSIVGAIESGFSFVRCRISGAGQIY LGRAWGDSSRVVYSYTDMGKEVVPVGWDGWNIRAPEKSGVYYGEYKCSGPGALAHKRIGWSLVLNDAQAKPFTGTHFV |
Full Sequence |
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Protein Sequence Length: 437 Download |
MQHHHLLFGR ATVAVVALLL APLVSVASSS LPASTSNHPQ QASFAVNTPA KKLSPGGGGG 60 QPASTSFVSG GNGGGQQSNN FVVADGNAQP GSGGSGSFGK FIAENVESYV VNKQICAAKL 120 ATKNGTGVSA VDAELSAAEA GAVRWVVSPD GKGKFRTISE AVKAVPEKNK KRVILDICPG 180 TYKEKVLVPY TKHFVTLLGN PKNPPVIMWD DRAATHGKDG KPVGIVGSAT VAVESEASGI 240 VFREGGQAVA LRVFGNKAAF YECTIDGGQD TLYDHKGLHY FKGCLIRGSV DFIFGFGRSL 300 YEDCAIVSVT KQVAVLMQPT KSIVGAIESG FSFVRCRISG AGQIYLGRAW GDSSRVVYSY 360 TDMGKEVVPV GWDGWNIRAP EKSGVYYGEY KCSGPGALAH KRIGWSLVLN DAQAKPFTGT 420 HFVYSDSWIL PPPKLA* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 1.0e-73 | 147 | 429 | 293 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 5.0e-76 | 140 | 431 | 305 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 2.0e-80 | 146 | 429 | 304 | + pectinesterase | ||
PLN02682 | PLN02682 | 4.0e-97 | 151 | 431 | 295 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 9.0e-100 | 119 | 435 | 332 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY81792.1 | 0 | 96 | 434 | 44 | 399 | hypothetical protein OsI_36964 [Oryza sativa Indica Group] |
GenBank | EEC69509.1 | 0 | 97 | 434 | 69 | 413 | hypothetical protein OsI_38743 [Oryza sativa Indica Group] |
RefSeq | NP_001067039.1 | 0 | 97 | 434 | 68 | 412 | Os12g0563700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001068464.1 | 0 | 96 | 433 | 44 | 398 | Os11g0683700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002443368.1 | 0 | 68 | 436 | 52 | 432 | hypothetical protein SORBIDRAFT_08g018360 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 7e-38 | 146 | 429 | 10 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 6e-34 | 146 | 429 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 3e-17 | 148 | 418 | 12 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 3e-17 | 148 | 418 | 12 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 3e-17 | 148 | 418 | 12 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |