Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00036845m |
Family | GH3 |
Protein Properties | Length: 785 Molecular Weight: 82728.1 Isoelectric Point: 5.5429 |
Chromosome | Chromosome/Scaffold: 000153 Start: 37494 End: 41204 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 88 | 338 | 0 |
GVPRLGVPAYKWWNEALHGLATSGKGLHFDAPGGGVRAATSFPQVLLTAAAFDDGLWFRVGQAIGREARALFNVGQAEGLTMWSPNVNIFRDPRWGRGQE TPGEDPAVASRYAAAFVRGIQGNGSSLLQTSACCKHATAYDLEDWGGVQRYSFVARVTAQDLEDTFNPPFRSCVADGGATCVMCAYTAVNGVPSCADPGL LTGTVRGDWGLDGYVASDCDAVAIMRDAQRYAASPEDAVAVALKAGLDIDC |
Full Sequence |
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Protein Sequence Length: 785 Download |
MASSSGPRRR GINSGGTVAA ALLLATALAA AAAAAAEPPF SCGASSAEAA QGYAFCDAAL 60 GPAARAADLV SRLTPAEKVA QLGDVAPGVP RLGVPAYKWW NEALHGLATS GKGLHFDAPG 120 GGVRAATSFP QVLLTAAAFD DGLWFRVGQA IGREARALFN VGQAEGLTMW SPNVNIFRDP 180 RWGRGQETPG EDPAVASRYA AAFVRGIQGN GSSLLQTSAC CKHATAYDLE DWGGVQRYSF 240 VARVTAQDLE DTFNPPFRSC VADGGATCVM CAYTAVNGVP SCADPGLLTG TVRGDWGLDG 300 YVASDCDAVA IMRDAQRYAA SPEDAVAVAL KAGLDIDCGA YVQQHATAAI QQGKLTEQDI 360 DRALTNLFAV RMRLGHFDGD PRSNTYGGLG AADICTPEHR GLALEAAQDG IVLLKNDDGL 420 LPLDRSAVGS AAAIGPNADD GRALIANYFG PPCESTTPLK GLQSYVSNVR FLAGCSSAAC 480 DAAATDQAAA LAGSADYVFL FMGLSQQQES EGKDRTSLLL PGMQQSLITA VADAAKRPVI 540 LVLLSGGPVD ITFAQSNPKI GAILWAGYPG QAGGLAIARV LFGDHNPGGR LPVTWYPEEF 600 TKVPMTDMRM RADTATGYPG RSYRFYQGKA VYKFGYGLSY SSFTRKLVSR TNTPSFSTAV 660 LASLRETMAE EDGGSYPVDN IGTDGCEQLK FQATVEVQNH GPMDGKHAVL MFLRWPNATD 720 GRPSSQLIGF RSQHLKAGEK ANLRFDVSPC EHFSRVREDG KKVIDRGSHF LMIDNDEMEI 780 RFEA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01915 | Glyco_hydro_3_C | 7.0e-52 | 411 | 641 | 237 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
COG1472 | BglX | 1.0e-55 | 86 | 441 | 367 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 5.0e-64 | 85 | 370 | 290 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 4.0e-72 | 127 | 749 | 668 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 38 | 784 | 761 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX92971.1 | 0 | 37 | 784 | 24 | 771 | beta-D-xylosidase [Oryza sativa Japonica Group] |
RefSeq | NP_001067726.1 | 0 | 38 | 784 | 35 | 782 | Os11g0297800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002489304.1 | 0 | 22 | 784 | 1 | 750 | hypothetical protein SORBIDRAFT_0010s007570 [Sorghum bicolor] |
RefSeq | XP_002489310.1 | 0 | 29 | 784 | 17 | 772 | hypothetical protein SORBIDRAFT_0010s010920 [Sorghum bicolor] |
RefSeq | XP_002489311.1 | 0 | 20 | 784 | 29 | 791 | hypothetical protein SORBIDRAFT_0010s012040 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 127 | 781 | 91 | 729 | A Chain A, Crystal Structure Of Upf0341 Protein Yhiq From E. Coli, Northeast Structural Genomics Target Er585 |
PDB | 3u48_A | 0 | 127 | 781 | 91 | 729 | A Chain A, Crystal Structure Of Upf0341 Protein Yhiq From E. Coli, Northeast Structural Genomics Target Er585 |
PDB | 3u4a_B | 0 | 127 | 781 | 91 | 729 | A Chain A, Crystal Structure Of Upf0341 Protein Yhiq From E. Coli, Northeast Structural Genomics Target Er585 |
PDB | 3u4a_A | 0 | 127 | 781 | 91 | 729 | A Chain A, Crystal Structure Of Upf0341 Protein Yhiq From E. Coli, Northeast Structural Genomics Target Er585 |
PDB | 2x41_A | 6e-34 | 83 | 747 | 41 | 674 | A Chain A, Crystal Structure Of Upf0341 Protein Yhiq From E. Coli, Northeast Structural Genomics Target Er585 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |