Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00036846m |
Family | GH3 |
Protein Properties | Length: 701 Molecular Weight: 74245.1 Isoelectric Point: 10.2137 |
Chromosome | Chromosome/Scaffold: 000153 Start: 26446 End: 30354 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 82 | 229 | 3.7e-37 |
MPRLGVPGYKWWNEALHGVAISGKGIHLDQGAVRSATSFPQVLLTAAASNDNLWFRIGQATGKEARALYNIGQAEGLSMWSPNVNIFRDPRWGRGQETPS EDPAVASRYAAAFVRGIQGSASNTRSAPPAVLLTSACCKHATAYDLED |
Full Sequence |
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Protein Sequence Length: 701 Download |
MAVLAAAAAA IRLLAAVAVV PALLAGPAAA GAPPFSCGPS SPSRALPFCN TKLPAAQRAA 60 DLVSRMSPAE KVSQLGDISP GMPRLGVPGY KWWNEALHGV AISGKGIHLD QGAVRSATSF 120 PQVLLTAAAS NDNLWFRIGQ ATGKEARALY NIGQAEGLSM WSPNVNIFRD PRWGRGQETP 180 SEDPAVASRY AAAFVRGIQG SASNTRSAPP AVLLTSACCK HATAYDLEDW KGVSRGRASC 240 LMCAYTSVNG VPNCANADLL TKTFRNSWGL DGYVAADYDA VAIMRISQFY GPTAEDTVAT 300 TLKAVLSNKW RSICRKGKLT QQDVDKALKN LFTTRMRLGH FDGDPKAGAA LDGIVLLKNG 360 AGVLPLKRGA VTSAAVIGHN ANGVLALLGN YWGPPCAPTT PLQGIQGFVK NVKFLAGCNS 420 AACNAAATPQ AAALASSSDE VILFMGLSQE QESEGKDRTS LLPPGNQQSL ITAVANAAKR 480 PVILVLLTGG PVDITFAQSN PKIGAILWAG YPGQAGGLAI AKVLFGEKNP SGKLPVTWMR 540 AAAGYPGRTY RFYNGKTIYK FGHGLSYSKF SHRLVTGRKN PVHNTSLLAA GRTATTEDNT 600 GYHVDRIGDE VCEQLKFPPV VKHTALMFLR WPNATDGRPT KQLVGFQSQH IKAGKKAHLR 660 FEVSPCEHFS RVRRDGRKVI DKGSHFLKVG KHEVEISFGA * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1472 | BglX | 8.0e-30 | 83 | 405 | 367 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 7.0e-38 | 80 | 331 | 291 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 1.0e-47 | 47 | 665 | 755 | + beta-D-glucoside glucohydrolase; Provisional | ||
pfam01915 | Glyco_hydro_3_C | 9.0e-56 | 354 | 568 | 224 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
PLN03080 | PLN03080 | 0 | 35 | 698 | 761 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX96800.1 | 0 | 33 | 698 | 109 | 851 | Glycosyl hydrolase family 3 C terminal domain, putative [Oryza sativa Japonica Group] |
RefSeq | NP_001067726.1 | 0 | 33 | 700 | 35 | 782 | Os11g0297800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002489304.1 | 0 | 19 | 700 | 3 | 750 | hypothetical protein SORBIDRAFT_0010s007570 [Sorghum bicolor] |
RefSeq | XP_002489310.1 | 0 | 30 | 700 | 23 | 772 | hypothetical protein SORBIDRAFT_0010s010920 [Sorghum bicolor] |
RefSeq | XP_002489311.1 | 0 | 14 | 700 | 28 | 791 | hypothetical protein SORBIDRAFT_0010s012040 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 1e-37 | 161 | 690 | 128 | 722 | A Chain A, Crystal Structure Of Upf0341 Protein Yhiq From E. Coli, Northeast Structural Genomics Target Er585 |
PDB | 3u48_A | 1e-37 | 161 | 690 | 128 | 722 | A Chain A, Crystal Structure Of Upf0341 Protein Yhiq From E. Coli, Northeast Structural Genomics Target Er585 |
PDB | 3u4a_B | 6e-37 | 161 | 690 | 128 | 722 | A Chain A, Crystal Structure Of Upf0341 Protein Yhiq From E. Coli, Northeast Structural Genomics Target Er585 |
PDB | 3u4a_A | 6e-37 | 161 | 690 | 128 | 722 | A Chain A, Crystal Structure Of Upf0341 Protein Yhiq From E. Coli, Northeast Structural Genomics Target Er585 |
PDB | 4i8d_B | 6e-25 | 169 | 696 | 120 | 705 | A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From Trichoderma Reesei |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |