Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00037030m |
Family | GH5 |
Protein Properties | Length: 475 Molecular Weight: 52680.5 Isoelectric Point: 5.4624 |
Chromosome | Chromosome/Scaffold: 000512 Start: 4238 End: 7051 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 94 | 422 | 8.3e-34 |
PFYVNGFNAYWLMILAADPSTRGKVTEVFQQAAAVGLTVCRTWGFNDGGWRALQKSPAVYDEDVFKALDFVVSEARNYRIRLILSLINNWDGYGGKAQYV KWARDAGLNITSDDDFFSDQTVKGYFKNHVKVVNTYTNVTYKDDPTIFAWELMNELRCTSDPTGNKLQAWIQEMAFHVKSIDPDHLLEVGAEGFYGPSSP ARLQANPNTYAGQVGTDFIRNHRVLGVDFASVHIYPDTWMPGASVDAQLKFAQSWMQAHIADAEGTLGMPVVFTEFGVSTKARSAFNATSRDRFIQAVYG LLLDSTRLGGAGAGALLWQVFPEGAEYMD |
Full Sequence |
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Protein Sequence Length: 475 Download |
MVATIMETIF KEKSRGKVSL IHFLVRCFAV AATILLLTDR IHAHVDGVEI LGNDVDAPPS 60 SVQGIEVINS EAIRDDQWQT VKTRGSQFVV GDRPFYVNGF NAYWLMILAA DPSTRGKVTE 120 VFQQAAAVGL TVCRTWGFND GGWRALQKSP AVYDEDVFKA LDFVVSEARN YRIRLILSLI 180 NNWDGYGGKA QYVKWARDAG LNITSDDDFF SDQTVKGYFK NHVKVVNTYT NVTYKDDPTI 240 FAWELMNELR CTSDPTGNKL QAWIQEMAFH VKSIDPDHLL EVGAEGFYGP SSPARLQANP 300 NTYAGQVGTD FIRNHRVLGV DFASVHIYPD TWMPGASVDA QLKFAQSWMQ AHIADAEGTL 360 GMPVVFTEFG VSTKARSAFN ATSRDRFIQA VYGLLLDSTR LGGAGAGALL WQVFPEGAEY 420 MDDGYGVVLP KAKATAGIMS VHSRRLVVFN SRCAWSCRWG CRKEEEQSED VDDD* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00150 | Cellulase | 0.0004 | 153 | 391 | 243 | + Cellulase (glycosyl hydrolase family 5). | ||
COG3934 | COG3934 | 6.0e-22 | 121 | 375 | 255 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI18019.1 | 0 | 75 | 465 | 67 | 460 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273230.1 | 0 | 75 | 465 | 6 | 399 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002273389.1 | 0 | 75 | 465 | 6 | 399 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002466346.1 | 0 | 3 | 463 | 5 | 486 | hypothetical protein SORBIDRAFT_01g006080 [Sorghum bicolor] |
RefSeq | XP_002528703.1 | 0 | 63 | 469 | 57 | 465 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 81 | 446 | 7 | 369 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 84 | 425 | 17 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 84 | 425 | 17 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 84 | 425 | 17 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 84 | 425 | 17 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FE646382 | 219 | 1 | 219 | 0 |
DT747977 | 292 | 81 | 368 | 0 |
JK987915 | 296 | 73 | 364 | 0 |
FE642635 | 209 | 1 | 209 | 0 |
EL450176 | 268 | 92 | 355 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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