Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00037189m |
Family | GH5 |
Protein Properties | Length: 454 Molecular Weight: 50365.9 Isoelectric Point: 6.3828 |
Chromosome | Chromosome/Scaffold: 000038 Start: 16307 End: 18720 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 68 | 401 | 4.2e-34 |
GEPFYPNGWNSYWLMDQAVDARSRDRVSRMFRAAAEMGLTVCRSWAFNDGAYNALQVSPGHFDERVFKALDRVLVEAGRHGVRLILSLANNLEAYGGKTQ YVRWAWEEGVGLSASNDSFFFDPAIRDYFKVYLKTLLTRKNHLTGVEYRDDPTILAWELMNEPRCTTDLSGDTLQRWIEEMAAYVKSIDRKHLLTVGTEG FYGPTSPPSKQDVNPGIWKDNNYGSDFIRNAKIPDIDFASIHLYPDTWLLKQHATAEEKLEFAKRWVASHIEDGDTELGKPVLTTEFGLSRRAQGFDPSH RDVLYRAIYDIVYGSAARGGAGAAAFVWQLAPEG |
Full Sequence |
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Protein Sequence Length: 454 Download |
MALGGGLALY HVLGVATCVA LLYFTFGEVD LRHISLPSLP GSGAASPRAA AVAAPFVERR 60 GAQLFLEGEP FYPNGWNSYW LMDQAVDARS RDRVSRMFRA AAEMGLTVCR SWAFNDGAYN 120 ALQVSPGHFD ERVFKALDRV LVEAGRHGVR LILSLANNLE AYGGKTQYVR WAWEEGVGLS 180 ASNDSFFFDP AIRDYFKVYL KTLLTRKNHL TGVEYRDDPT ILAWELMNEP RCTTDLSGDT 240 LQRWIEEMAA YVKSIDRKHL LTVGTEGFYG PTSPPSKQDV NPGIWKDNNY GSDFIRNAKI 300 PDIDFASIHL YPDTWLLKQH ATAEEKLEFA KRWVASHIED GDTELGKPVL TTEFGLSRRA 360 QGFDPSHRDV LYRAIYDIVY GSAARGGAGA AAFVWQLAPE GMEEYHDDYS VVPSEHPSLR 420 RLIKEQSCRL AKLRPGAGEE ARRALAACAA GSS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam12876 | Cellulase-like | 0.003 | 214 | 311 | 107 | + Sugar-binding cellulase-like. This is a putative cellulase family. | ||
pfam00150 | Cellulase | 1.0e-6 | 217 | 380 | 170 | + Cellulase (glycosyl hydrolase family 5). | ||
COG3934 | COG3934 | 3.0e-28 | 129 | 415 | 290 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY75800.1 | 0 | 1 | 450 | 1 | 445 | hypothetical protein OsI_03716 [Oryza sativa Indica Group] |
RefSeq | NP_001044230.1 | 0 | 1 | 445 | 1 | 440 | Os01g0746700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001130322.1 | 0 | 1 | 453 | 1 | 453 | hypothetical protein LOC100191416 [Zea mays] |
Swiss-Prot | Q0JJD4 | 0 | 1 | 450 | 1 | 445 | MAN2_ORYSJ RecName: Full=Mannan endo-1,4-beta-mannosidase 2; AltName: Full=Beta-mannanase 2; AltName: Full=Endo-beta-1,4-mannanase 2; AltName: Full=OsMAN2; Flags: Precursor |
RefSeq | XP_002458478.1 | 0 | 1 | 453 | 1 | 461 | hypothetical protein SORBIDRAFT_03g034420 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 56 | 433 | 6 | 372 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 60 | 401 | 17 | 346 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 60 | 401 | 17 | 346 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 60 | 401 | 17 | 346 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 60 | 401 | 17 | 346 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |