| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00037365m |
| Family | PL4 |
| Protein Properties | Length: 619 Molecular Weight: 70392 Isoelectric Point: 4.9303 |
| Chromosome | Chromosome/Scaffold: 000444 Start: 10024 End: 13655 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 16 | 605 | 0 |
| ATAGVRVTVSDRYVEIKNGIFELMLSNPDGIVTGVRYNGVDNLMEILNKEDNRGYWDLVWNPPGKKTGIFDVIKGTEFRIIYHDENQAEVSFTRNWDPSL EGKAVPLNIDKRFIVLRGSSGFYTYGIYEHKEGWPDFGLGETRVAFKLRKDKFHYMALADDRQRIMPMPDDRLPPRGQPLAYPEAVLLVDPINPDLRGEV DDKYQYSYEDQYNNVHGWMSFDPPIGFWQITPSDEFRTGGPLKQNLTSHVGPTTLAMFLSAHYAGDDLSPMFTNGEYWKKVHGPMMIEKESWPYCFALSE DFQKTEQRGCISGRLLVRDRYIDDGDLYASGAYVGLALPGEAGSWQRECKGYQFWCRADVDGSFYIRNIITGNYNLYAWVPGFIGDHKLDATLTIVSGDD IYLGDLVYQPPRDGPTMWEIGVPDRSAAEFYVPDPNPKYVNRLYINHPDRFRQYGLWERYAELYPDSDLVYTIGQSDYSTDWFYAQVNRKVDENTYQPTT WQIKFNLDSVSPGSTYKFRVALASSARAELQVFFNDKDRGVPHFATGMIGRDNAIARHGIHGLYWLFNINVNSDWLVQGMNTIYLNVHKS | |||
| Full Sequence |
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| Protein Sequence Length: 619 Download |
| MGPPRAASPA GAAVDATAGV RVTVSDRYVE IKNGIFELML SNPDGIVTGV RYNGVDNLME 60 ILNKEDNRGY WDLVWNPPGK KTGIFDVIKG TEFRIIYHDE NQAEVSFTRN WDPSLEGKAV 120 PLNIDKRFIV LRGSSGFYTY GIYEHKEGWP DFGLGETRVA FKLRKDKFHY MALADDRQRI 180 MPMPDDRLPP RGQPLAYPEA VLLVDPINPD LRGEVDDKYQ YSYEDQYNNV HGWMSFDPPI 240 GFWQITPSDE FRTGGPLKQN LTSHVGPTTL AMFLSAHYAG DDLSPMFTNG EYWKKVHGPM 300 MIEKESWPYC FALSEDFQKT EQRGCISGRL LVRDRYIDDG DLYASGAYVG LALPGEAGSW 360 QRECKGYQFW CRADVDGSFY IRNIITGNYN LYAWVPGFIG DHKLDATLTI VSGDDIYLGD 420 LVYQPPRDGP TMWEIGVPDR SAAEFYVPDP NPKYVNRLYI NHPDRFRQYG LWERYAELYP 480 DSDLVYTIGQ SDYSTDWFYA QVNRKVDENT YQPTTWQIKF NLDSVSPGST YKFRVALASS 540 ARAELQVFFN DKDRGVPHFA TGMIGRDNAI ARHGIHGLYW LFNINVNSDW LVQGMNTIYL 600 NVHKSPVQEP EPVSGADV* 660 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 6.0e-29 | 322 | 421 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 9.0e-46 | 433 | 602 | 172 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 3.0e-63 | 25 | 299 | 280 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 4.0e-99 | 25 | 215 | 191 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD10227.1 | 0 | 1 | 608 | 1 | 630 | putative MYST1 [Oryza sativa Japonica Group] |
| GenBank | EEE69123.1 | 0 | 1 | 608 | 660 | 1289 | hypothetical protein OsJ_28233 [Oryza sativa Japonica Group] |
| RefSeq | NP_001062464.1 | 0 | 1 | 608 | 14 | 643 | Os08g0554100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001062465.1 | 0 | 3 | 608 | 4 | 591 | Os08g0554300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002445711.1 | 0 | 1 | 605 | 14 | 643 | hypothetical protein SORBIDRAFT_07g024560 [Sorghum bicolor] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GO850432 | 273 | 25 | 297 | 0 |
| GO843311 | 270 | 25 | 294 | 0 |
| JG785405 | 256 | 300 | 553 | 0 |
| FE632882 | 246 | 107 | 328 | 0 |
| CA280421 | 214 | 25 | 238 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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