Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00037663m |
Family | GH9 |
Protein Properties | Length: 647 Molecular Weight: 68164 Isoelectric Point: 7.17 |
Chromosome | Chromosome/Scaffold: 000234 Start: 33729 End: 38232 |
Description | glycosyl hydrolase 9B1 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH9 | 167 | 630 | 0 |
DYGDALHKSILFFEGQRSGRLPPDQRLRWRQDSGIHDGAEAGVDLTGGYYDAGDNVKFGFPMAFTATLMSWGLIDFGRSFGAREEAAAREAVRWATDYLM KATATPGTVYVQVGDASRDHACWERPEDMDTPRTVYKVDAAHPGSDVAAETAAALAAGSLVFRGADPAYAARLLARAAEVFAFADAHRGAYSGSLRDAVC PCYCDYSGYQDELLWGAAWLHRASRRREYREYIKRNEVALGASDAINEFGWDNKHAGINVLISKEVLMGKDEYFQSFRENADNFICGLLPGISGGSGHPQ IQYSPGGLLFKVGNSNMQHVTSLSFLLLAYSNYLSHAGARVSCGGSAAAASPVQLRRVAKRQVDYILGDNPLRMSYMVGYGPRYPLRIHHRASSLPSVAA HPARIGCKAGAAYYASPAPNPNLLVGAVVGGPSNSTDAFPDARAVFQQSEPTTYINAPLLGLLA |
Full Sequence |
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Protein Sequence Length: 647 Download |
MAHDCQIVPP MDLRCAERLT ALIDEGPVLL PCHSLHGPLL PLPSETGAAP AVTSGQGERS 60 APQLAGSPAA AAGGAGMGTA AASRSSPRPP PGGVSPSTCL PHALTPADHQ PTKLPPPATA 120 PTKTQRPPAS LSLLSFPMAR LVSTPAAVAV VVAVLLAASP AALAVHDYGD ALHKSILFFE 180 GQRSGRLPPD QRLRWRQDSG IHDGAEAGVD LTGGYYDAGD NVKFGFPMAF TATLMSWGLI 240 DFGRSFGARE EAAAREAVRW ATDYLMKATA TPGTVYVQVG DASRDHACWE RPEDMDTPRT 300 VYKVDAAHPG SDVAAETAAA LAAGSLVFRG ADPAYAARLL ARAAEVFAFA DAHRGAYSGS 360 LRDAVCPCYC DYSGYQDELL WGAAWLHRAS RRREYREYIK RNEVALGASD AINEFGWDNK 420 HAGINVLISK EVLMGKDEYF QSFRENADNF ICGLLPGISG GSGHPQIQYS PGGLLFKVGN 480 SNMQHVTSLS FLLLAYSNYL SHAGARVSCG GSAAAASPVQ LRRVAKRQVD YILGDNPLRM 540 SYMVGYGPRY PLRIHHRASS LPSVAAHPAR IGCKAGAAYY ASPAPNPNLL VGAVVGGPSN 600 STDAFPDARA VFQQSEPTTY INAPLLGLLA YFSAHPGLEA AQLGSD* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02613 | PLN02613 | 6.0e-164 | 167 | 630 | 467 | + endoglucanase | ||
pfam00759 | Glyco_hydro_9 | 2.0e-166 | 167 | 630 | 475 | + Glycosyl hydrolase family 9. | ||
PLN02308 | PLN02308 | 0 | 166 | 636 | 471 | + endoglucanase | ||
PLN02266 | PLN02266 | 0 | 166 | 635 | 470 | + endoglucanase | ||
PLN03009 | PLN03009 | 0 | 166 | 637 | 474 | + cellulase |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACL54781.1 | 0 | 138 | 636 | 1 | 499 | unknown [Zea mays] |
GenBank | EAZ00403.1 | 0 | 146 | 646 | 3 | 497 | hypothetical protein OsI_22418 [Oryza sativa Indica Group] |
RefSeq | NP_001057318.1 | 0 | 146 | 646 | 3 | 497 | Os06g0256900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001136728.1 | 0 | 138 | 636 | 1 | 495 | hypothetical protein LOC100216867 [Zea mays] |
RefSeq | XP_002438182.1 | 0 | 109 | 636 | 33 | 557 | hypothetical protein SORBIDRAFT_10g009270 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ksd_A | 0 | 166 | 630 | 3 | 426 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
PDB | 1ksc_A | 0 | 166 | 630 | 3 | 426 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
PDB | 1ks8_A | 0 | 166 | 630 | 3 | 426 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
PDB | 4tf4_B | 0 | 167 | 630 | 5 | 438 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
PDB | 4tf4_A | 0 | 167 | 630 | 5 | 438 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO788388 | 407 | 231 | 635 | 0 |
EE288895 | 282 | 353 | 634 | 0 |
DR824510 | 279 | 166 | 444 | 0 |
DV174844 | 285 | 270 | 554 | 0 |
FL867322 | 241 | 324 | 563 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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