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Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00037692m |
Family | GH3 |
Protein Properties | Length: 761 Molecular Weight: 80813.4 Isoelectric Point: 7.6229 |
Chromosome | Chromosome/Scaffold: 000779 Start: 12290 End: 16360 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 61 | 314 | 0 |
AGMPRLGVPPYKYWSEGLHGLAFWGHGLRFEGAVRGVTSFPQVLLTAASFDEGLWFRIGQAIGREARALYNLGQAEGLTIWSPNVNIFRDPRWGRGQETP GEDPATAGKYAVAFVRGIQGSSAAGGGGAPLQASACCKHATAYDLEDWNGVQRYNFAARVTARDLADTFNPPFRSCVVDGGATCVMCAYTGVNGVPACAS SDLLTRTFRGDWGLDGYVASDCDAVAIMRDAQRYAPTPEDTVAVALKAGLDLNC |
Full Sequence |
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Protein Sequence Length: 761 Download |
MLSSSAARAA AADPGFSCGP SSPSRSLPFC DRSLPAARRA ADLVSRMTVA EKVSQMGDEA 60 AGMPRLGVPP YKYWSEGLHG LAFWGHGLRF EGAVRGVTSF PQVLLTAASF DEGLWFRIGQ 120 AIGREARALY NLGQAEGLTI WSPNVNIFRD PRWGRGQETP GEDPATAGKY AVAFVRGIQG 180 SSAAGGGGAP LQASACCKHA TAYDLEDWNG VQRYNFAARV TARDLADTFN PPFRSCVVDG 240 GATCVMCAYT GVNGVPACAS SDLLTRTFRG DWGLDGYVAS DCDAVAIMRD AQRYAPTPED 300 TVAVALKAGL DLNCGNYTQV HGMAAIRQGK MAEKDVDKAL TNLFAVRMRL GHFDGDPRGS 360 AHYGGLGAAD VCTAEHKSLA LQAAQDGIVL LKNDAGILPL DRSAVGSAAV IGHNADNPLV 420 LSGNYFGPAC ETTTPLKGLQ GYVKNVRFLA GCNSAACGVA ATGQAAALAS SSEYVFLFMG 480 LSQDQEKEGL DRTSLLLPGK QQSLITAVAS AAKRPVILVL LTGGPLDVTF AQSNPKIGAI 540 LWAGYPGQAG GLAIASVLFG DHNPSGRLPV TWYPEDFTKV PMTDMRMRAD PATGYPGRSY 600 RFYTGKTVYN FGYGLSYSKF SRRLLAGGKN PAPNTSLLAG LPATSKDTTS YYHVDDIGAD 660 GCEQLKFPAE VQVENHGPMD GKHSVLMFLR WPNATNGRPS SQLIGFRSQH LKAGEKANVR 720 IDVSPCEHFS RAREDGKMVI DRGSHFLMVG RDEWEISFEA * 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1472 | BglX | 5.0e-48 | 59 | 418 | 364 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam01915 | Glyco_hydro_3_C | 1.0e-53 | 388 | 618 | 237 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
pfam00933 | Glyco_hydro_3 | 1.0e-55 | 60 | 346 | 291 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 1.0e-65 | 35 | 725 | 784 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 14 | 760 | 763 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX92971.1 | 0 | 13 | 760 | 24 | 771 | beta-D-xylosidase [Oryza sativa Japonica Group] |
GenBank | EAY80660.1 | 0 | 13 | 760 | 24 | 771 | hypothetical protein OsI_35838 [Oryza sativa Indica Group] |
RefSeq | NP_001067726.1 | 0 | 14 | 760 | 35 | 782 | Os11g0297800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002489304.1 | 0 | 9 | 760 | 12 | 750 | hypothetical protein SORBIDRAFT_0010s007570 [Sorghum bicolor] |
RefSeq | XP_002489310.1 | 0 | 5 | 760 | 17 | 772 | hypothetical protein SORBIDRAFT_0010s010920 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 98 | 750 | 91 | 722 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
PDB | 3u48_A | 0 | 98 | 750 | 91 | 722 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
PDB | 3u4a_B | 0 | 98 | 750 | 91 | 722 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
PDB | 3u4a_A | 0 | 98 | 750 | 91 | 722 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
PDB | 2x41_A | 7e-33 | 38 | 723 | 2 | 674 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL821096 | 259 | 475 | 733 | 0 |
FL893595 | 244 | 473 | 716 | 0 |
FL885827 | 245 | 473 | 716 | 0 |
FL854818 | 251 | 55 | 305 | 0 |
FL874091 | 257 | 77 | 333 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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