Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00037995m |
Family | GH28 |
Protein Properties | Length: 413 Molecular Weight: 43405.5 Isoelectric Point: 7.4579 |
Chromosome | Chromosome/Scaffold: 000142 Start: 32589 End: 35387 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 393 | 0 |
AAACASSEQAVLAVPVGKAYRIWPVQLFGPCKKKLKLLISGAIVAPASPDEWAGRDPMKWLYIYGVDGLSVSGGGTIDGSGQQWWASTCKRKKTPPCYSG PRPKTVHFEECRGVSVQGVTLQNGQQFHLTFTRCSDVRASFLRVIAPADSPNTDGVHLNDTSHVQITDNLISTGDDCVSMVGNCSDVRVTDISCGPGHGI SIGSLGKNRTTDMVENVRVDTCLLTNTTNGVRIKTWQGGMGFARDLRFESIVMKNVSNPIIIDQYYCDQPTPCANQTRAVEVREVGFADIRGTSATAKAI SIACSDAVPCRDLELKNVNLTLEGGGGGRATASCYRAY |
Full Sequence |
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Protein Sequence Length: 413 Download |
MSASLPLPLA VAVMLAAAAL LLCGGAEARV LLTLDDFGAV GDGIANDTQA FVDAWAAACA 60 SSEQAVLAVP VGKAYRIWPV QLFGPCKKKL KLLISGAIVA PASPDEWAGR DPMKWLYIYG 120 VDGLSVSGGG TIDGSGQQWW ASTCKRKKTP PCYSGPRPKT VHFEECRGVS VQGVTLQNGQ 180 QFHLTFTRCS DVRASFLRVI APADSPNTDG VHLNDTSHVQ ITDNLISTGD DCVSMVGNCS 240 DVRVTDISCG PGHGISIGSL GKNRTTDMVE NVRVDTCLLT NTTNGVRIKT WQGGMGFARD 300 LRFESIVMKN VSNPIIIDQY YCDQPTPCAN QTRAVEVREV GFADIRGTSA TAKAISIACS 360 DAVPCRDLEL KNVNLTLEGG GGGRATASCY RAYGKSAGAV VPPSCLAKPT AS* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 6.0e-80 | 32 | 407 | 380 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 5.0e-84 | 37 | 405 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-89 | 79 | 405 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 8.0e-97 | 27 | 402 | 378 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-145 | 31 | 407 | 377 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF80870.1 | 0 | 27 | 408 | 29 | 410 | unknown [Zea mays] |
GenBank | ACF88280.1 | 0 | 23 | 408 | 21 | 406 | unknown [Zea mays] |
GenBank | ACR38523.1 | 0 | 23 | 408 | 21 | 381 | unknown [Zea mays] |
RefSeq | NP_001151886.1 | 0 | 27 | 408 | 29 | 410 | polygalacturonase [Zea mays] |
RefSeq | XP_002440167.1 | 0 | 24 | 408 | 24 | 407 | hypothetical protein SORBIDRAFT_09g027150 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-23 | 126 | 376 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 8e-17 | 124 | 389 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-17 | 124 | 389 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-17 | 124 | 389 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-17 | 124 | 389 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |