| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00038108m |
| Family | GH116 |
| Protein Properties | Length: 834 Molecular Weight: 92097.8 Isoelectric Point: 6.1113 |
| Chromosome | Chromosome/Scaffold: 000542 Start: 24592 End: 29367 |
| Description | Beta-glucosidase, GBA2 type family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH116 | 421 | 766 | 0 |
| GQFLYMEGMEYNMYNTYDVHFYSFALLALFPELELSLQRDFARAVLLHDPRLRRTHDVGLNDPWFELNAYLLHDATRWKDLNPKFVLQVYRDAVATGDAA FAEAAWPAVYTAMAYMDQFDRDGDVVIENEGIPDQTYDIWSVSGVSAYTGGLWVAALQAAAAMARIVGDRAAEAYFHERHGKARRVYDGELCNGSYFNYD NSGGATSSSIMADQLAGQWYARACGLEPVVEEAKARSALATVLDYNVMRVRGGAVGAVNGMRPDGSVDASSPQSKEVWPGVTYSVAAAMVHEGMPEAAFR TAKGAHDAAWSKDGFGYAFQTPEAWTVDGGYRSLHYMRPLGIWAMQ | |||
| Full Sequence |
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| Protein Sequence Length: 834 Download |
| MGSAELQQAK ALSHIDCSRP ASRTWQRRFD DEGKKVAMFR MTMNDMMAIV NTDCFYGGIA 60 FVSRPNGKKY STVLSAPTAD LLKGVGKAGI GSWDWKLKED KCTYHALFPR SWTVYDGEPD 120 PEIKITCRQI SPFIPHNYKE SSFPTAVFTF TVHNSGSTPA DVTLLFTWAL MQCSRNQESF 180 TVPSYTLQLR SCLFCRDRDG VIGVLLHHRT AGGHPPVTFA IASLETDDVP VNVCPSFTMG 240 LSSSGQFTAT DMWNEIKKHG SFGHAGAGNA STAASKPGSS VGAAVAASTA VPAGATRVVS 300 FSLAWAYPDV KFPAGTTYRR QEVHKFYGVD ADAAAEQLAH DALLEHVNWE SQIEEWQRPI 360 LHDERLPEWY PVALFNELYY LNAGGTIWTG NSEQLANDQT RIMNWRLTKK SLPRGGDENV 420 GQFLYMEGME YNMYNTYDVH FYSFALLALF PELELSLQRD FARAVLLHDP RLRRTHDVGL 480 NDPWFELNAY LLHDATRWKD LNPKFVLQVY RDAVATGDAA FAEAAWPAVY TAMAYMDQFD 540 RDGDVVIENE GIPDQTYDIW SVSGVSAYTG GLWVAALQAA AAMARIVGDR AAEAYFHERH 600 GKARRVYDGE LCNGSYFNYD NSGGATSSSI MADQLAGQWY ARACGLEPVV EEAKARSALA 660 TVLDYNVMRV RGGAVGAVNG MRPDGSVDAS SPQSKEVWPG VTYSVAAAMV HEGMPEAAFR 720 TAKGAHDAAW SKDGFGYAFQ TPEAWTVDGG YRSLHYMRPL GIWAMQWALS PPKLHKDLRV 780 AAASEESPAD AAVGQAKFEK LASMLKLPQE QQQQPKGYLW AIYDVIRQMA FPA* 840 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam12215 | GBA2_N | 2.0e-35 | 51 | 328 | 283 | + beta-Glucocerebrosidase 2 N terminal. This domain is found in bacteria, archaea and eukaryotes. This domain is typically between 320 to 354 amino acids in length. This domain is found associated with pfam04685. This domain is found in the protein beta-Glucocerebrosidase 2. It is found just after the extreme N terminus. This protein is located in the ER. The N terminal is thought to be the luminal domain while the C terminal is the cytosolic domain. The catalytic domain of GBA-2 is unknown. | ||
| COG4354 | COG4354 | 1.0e-74 | 89 | 769 | 729 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
| pfam04685 | DUF608 | 2.0e-130 | 421 | 767 | 360 | + Protein of unknown function, DUF608. This family represents a conserved region with a pankaryotic distribution in a number of uncharacterized proteins. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004348 | glucosylceramidase activity |
| GO:0006665 | sphingolipid metabolic process |
| GO:0016021 | integral to membrane |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI31319.1 | 0 | 27 | 825 | 105 | 942 | unnamed protein product [Vitis vinifera] |
| GenBank | EEE67921.1 | 0 | 60 | 833 | 126 | 919 | hypothetical protein OsJ_25789 [Oryza sativa Japonica Group] |
| RefSeq | NP_001060825.1 | 0 | 60 | 833 | 126 | 928 | Os08g0111200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002275782.1 | 0 | 27 | 825 | 121 | 958 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002444904.1 | 0 | 1 | 832 | 1 | 928 | hypothetical protein SORBIDRAFT_07g001140 [Sorghum bicolor] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FL855532 | 274 | 483 | 756 | 0 |
| EE024511 | 282 | 476 | 756 | 0 |
| DR806818 | 282 | 476 | 756 | 0 |
| EC904198 | 279 | 479 | 756 | 0 |
| EE171321 | 252 | 506 | 756 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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