| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00038110m |
| Family | GT47 |
| Protein Properties | Length: 419 Molecular Weight: 46487.4 Isoelectric Point: 7.162 |
| Chromosome | Chromosome/Scaffold: 000362 Start: 27850 End: 30941 |
| Description | Exostosin family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT47 | 51 | 346 | 0 |
| RLKVYVYDLPARYNTALLEKDPRCLTHMFATEVFVHRSLLSSAVRTLDPEEADWFFVPVYTTCDLTASGHPMPFDSPRMMRSAIRLVAERWPHWNRSEGA DHFLVTPHDFGACFHFKEDKAVARGILPLLRRATLVQTFGQRRHACLKGGSITVPPYAPPARMEARRLPPGTPRSVFVYFRGLFYDAGNDPEGGHYARGA RASVWENFRSNPLFDISTERPATYYEDMQRAVFCLCPLGWAPWSPRLVEAVVFGCIPVVIADDIVLPFADAIPWADIGVFVAEEDVPRLDTILTSI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 419 Download |
| MRPVLAIAIL ATTAAAVLFL GSEAQEVKQD HHTERISGSA GDVLEDDAVG RLKVYVYDLP 60 ARYNTALLEK DPRCLTHMFA TEVFVHRSLL SSAVRTLDPE EADWFFVPVY TTCDLTASGH 120 PMPFDSPRMM RSAIRLVAER WPHWNRSEGA DHFLVTPHDF GACFHFKEDK AVARGILPLL 180 RRATLVQTFG QRRHACLKGG SITVPPYAPP ARMEARRLPP GTPRSVFVYF RGLFYDAGND 240 PEGGHYARGA RASVWENFRS NPLFDISTER PATYYEDMQR AVFCLCPLGW APWSPRLVEA 300 VVFGCIPVVI ADDIVLPFAD AIPWADIGVF VAEEDVPRLD TILTSIPAEV VLRKQRLLAT 360 PAMKRAVLFS QPSQPGDAFH QILNGLARKL PHGDGVFLRP GQTVLNWTAG PPGDLKPW* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03016 | Exostosin | 3.0e-77 | 51 | 346 | 304 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF82849.1 | 0 | 28 | 418 | 27 | 418 | unknown [Zea mays] |
| GenBank | ACF86410.1 | 0 | 28 | 418 | 27 | 418 | unknown [Zea mays] |
| RefSeq | NP_001045264.1 | 0 | 25 | 418 | 24 | 417 | Os01g0926700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001149319.1 | 0 | 23 | 418 | 26 | 421 | secondary cell wall-related glycosyltransferase family 47 [Zea mays] |
| RefSeq | XP_002441217.1 | 0 | 1 | 418 | 3 | 422 | hypothetical protein SORBIDRAFT_09g022500 [Sorghum bicolor] |
