Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00038174m |
Family | CBM43 |
Protein Properties | Length: 247 Molecular Weight: 24911.7 Isoelectric Point: 5.5306 |
Chromosome | Chromosome/Scaffold: 000196 Start: 35256 End: 36645 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 85 | 167 | 1.7e-35 |
WCVASPSASATALQVALDYACGQGGADCSPIQQGGSCFNPDTVRDHASYAFNSYYQKNPVQTSCDFAGTAVLTSTNPSSSACQ |
Full Sequence |
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Protein Sequence Length: 247 Download |
MEGLRPVHWL ASLLAVLLFC HGRGSEQRPE HAELGRAGDT PERDVTSPLA TVPVVTPTVT 60 TPTAMPTATP ATQTPSLAGG GGGSWCVASP SASATALQVA LDYACGQGGA DCSPIQQGGS 120 CFNPDTVRDH ASYAFNSYYQ KNPVQTSCDF AGTAVLTSTN PSSSACQYPA TSTGAPVLNT 180 STPLTPTYGS PPGGYGSSPP TGYGNSPPLY GSMSPPDYGD NISASKKKTI LSPATSLLIA 240 TLALAG* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 4.0e-22 | 84 | 155 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 5.0e-39 | 84 | 168 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG38222.1 | 0 | 3 | 220 | 2 | 265 | GPI-anchored protein [Zea mays] |
GenBank | EEC79758.1 | 0 | 4 | 244 | 3 | 267 | hypothetical protein OsI_21142 [Oryza sativa Indica Group] |
GenBank | EEE64827.1 | 0 | 4 | 244 | 3 | 267 | hypothetical protein OsJ_19684 [Oryza sativa Japonica Group] |
RefSeq | NP_001056434.1 | 0 | 4 | 244 | 3 | 277 | Os05g0581900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002441577.1 | 0 | 4 | 245 | 3 | 231 | hypothetical protein SORBIDRAFT_09g029700 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 3e-22 | 83 | 173 | 11 | 101 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |