| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00038273m |
| Family | GH16 |
| Protein Properties | Length: 294 Molecular Weight: 31990.8 Isoelectric Point: 4.752 |
| Chromosome | Chromosome/Scaffold: 000774 Start: 4420 End: 5815 |
| Description | xyloglucan endotransglucosylase/hydrolase 12 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH16 | 37 | 212 | 3.5e-25 |
| TWEPQNCWAYDDGNRLSLALVSNSSGSMIRSKKQFLYGTVSTMIQLVPGDSAGTVTTYYTSSLGDNHDEIDYEFLGNVTGQPYTIHTNVYADGVGNKEMQ FKPWFDPTADYHNYTISWAPCLIVWYIDGVPIRAFRNYEASHGVAFPTSQPMYAYSSIWAAEDWATQGGRVKADWS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 294 Download |
| MVMGKHGAAA LLAAVLAASA LVGLAAAGNF YEECDATWEP QNCWAYDDGN RLSLALVSNS 60 SGSMIRSKKQ FLYGTVSTMI QLVPGDSAGT VTTYYTSSLG DNHDEIDYEF LGNVTGQPYT 120 IHTNVYADGV GNKEMQFKPW FDPTADYHNY TISWAPCLIV WYIDGVPIRA FRNYEASHGV 180 AFPTSQPMYA YSSIWAAEDW ATQGGRVKAD WSKAPFVASY HGIDLDVCEC YGGGCVAGCA 240 AAFGGSGRYC SLSGAQVGKM QWVQGNYRIY DYCADPKRWI NGQKPVECDL PQY* 300 |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| cd02175 | GH16_lichenase | 3.0e-21 | 37 | 211 | 190 | + lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure. |
| cd02183 | GH16_fungal_CRH1_transglycosylase | 4.0e-28 | 46 | 218 | 185 | + glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues. |
| pfam00722 | Glyco_hydro_16 | 6.0e-68 | 30 | 213 | 186 | + Glycosyl hydrolases family 16. |
| PLN03161 | PLN03161 | 2.0e-100 | 29 | 293 | 269 | + Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional |
| cd02176 | GH16_XET | 2.0e-121 | 29 | 288 | 263 | + Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling. |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005618 | cell wall |
| GO:0005975 | carbohydrate metabolic process |
| GO:0006073 | cellular glucan metabolic process |
| GO:0016762 | xyloglucan:xyloglucosyl transferase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001046554.1 | 0 | 29 | 293 | 31 | 296 | Os02g0280200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001046555.1 | 0 | 32 | 292 | 27 | 291 | Os02g0280300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151075.1 | 0 | 31 | 293 | 40 | 301 | LOC100284708 [Zea mays] |
| RefSeq | XP_002451950.1 | 0 | 1 | 293 | 1 | 295 | hypothetical protein SORBIDRAFT_04g010760 [Sorghum bicolor] |
| RefSeq | XP_002451953.1 | 0 | 23 | 293 | 18 | 290 | hypothetical protein SORBIDRAFT_04g010980 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1un1_B | 0 | 13 | 288 | 4 | 272 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 1un1_A | 0 | 13 | 288 | 4 | 272 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 1umz_B | 0 | 13 | 288 | 4 | 272 | A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg. |
| PDB | 1umz_A | 0 | 13 | 288 | 4 | 272 | A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg. |
| PDB | 2uwb_B | 0 | 38 | 278 | 28 | 259 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
