Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00038310m |
Family | CE8 |
Protein Properties | Length: 565 Molecular Weight: 59586.1 Isoelectric Point: 6.9711 |
Chromosome | Chromosome/Scaffold: 000003 Start: 84832 End: 86913 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 246 | 543 | 0 |
VTVDQSGAGNFTTVGDAVAAAPRNLDGSGGYHLIYVLAGVYEENVTVPKHSKYIMMVGDGIGQTVITGNRSVVDGWTTFQSATFAVVGQGFVAMNMTFRN TAGPAKHQAVALRSGADLSAFYGCSFEAFQDTLYTHSLRQFYRGCDVYGTVDYVFGNAAVVFQGCTFYSRLPMQGQSNTVTAQGRSDPNQNTGTSIQGCA LVPAPELAANAAFATLTYLGRPWKNFSRTVVMESYVGALVDPAGWMPWSGDFALDTLYYAEYNNTGPGADTSRRVAWPGYHVLGDGADAGNFTVTTMV |
Full Sequence |
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Protein Sequence Length: 565 Download |
MAVPCAAALC ALLLLSISGL ALSDAPPSTP VSPSAACNAT TDPTFCRSVL PPRGKGDLYT 60 YGRFSVAESL AGARRFAALV DRYLARHRHL SPGAVAALRD CQLMAELNMD FLSAAGATIR 120 ATDTLLDPQA DDVHTLLSAI LTNQQTCFDG LQAAAWSDGG GLDAPIANGT KLYSLSLSLF 180 TRAWVPTAKK AGGHSHKGGH HGGHGGGNRK KRPSARRGLF DVTDDEMVRR MAIEGPERTV 240 AVSSVVTVDQ SGAGNFTTVG DAVAAAPRNL DGSGGYHLIY VLAGVYEENV TVPKHSKYIM 300 MVGDGIGQTV ITGNRSVVDG WTTFQSATFA VVGQGFVAMN MTFRNTAGPA KHQAVALRSG 360 ADLSAFYGCS FEAFQDTLYT HSLRQFYRGC DVYGTVDYVF GNAAVVFQGC TFYSRLPMQG 420 QSNTVTAQGR SDPNQNTGTS IQGCALVPAP ELAANAAFAT LTYLGRPWKN FSRTVVMESY 480 VGALVDPAGW MPWSGDFALD TLYYAEYNNT GPGADTSRRV AWPGYHVLGD GADAGNFTVT 540 TMVLGDNWLP QTGVPFTSGL LSST* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02201 | PLN02201 | 2.0e-140 | 132 | 562 | 437 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 6.0e-144 | 96 | 560 | 465 | + pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 2.0e-172 | 246 | 546 | 301 | + Pectinesterase. | ||
PLN02713 | PLN02713 | 0 | 37 | 562 | 534 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN03043 | PLN03043 | 0 | 37 | 561 | 542 | + Probable pectinesterase/pectinesterase inhibitor; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAT38097.1 | 0 | 8 | 563 | 9 | 561 | putative pectinesterase [Oryza sativa Japonica Group] |
GenBank | EEE63420.1 | 0 | 8 | 563 | 9 | 577 | hypothetical protein OsJ_18232 [Oryza sativa Japonica Group] |
RefSeq | NP_001042865.1 | 0 | 34 | 560 | 38 | 556 | Os01g0311800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002440965.1 | 0 | 17 | 562 | 17 | 573 | hypothetical protein SORBIDRAFT_09g017920 [Sorghum bicolor] |
RefSeq | XP_002457749.1 | 0 | 28 | 562 | 36 | 565 | hypothetical protein SORBIDRAFT_03g012820 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 0 | 248 | 560 | 7 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 0 | 246 | 560 | 9 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_B | 6e-16 | 243 | 468 | 5 | 245 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_A | 6e-16 | 243 | 468 | 5 | 245 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntp_B | 6e-16 | 243 | 468 | 5 | 245 | A Chain A, Pectin Methylesterase From Carrot |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |