Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00038561m |
Family | GH28 |
Protein Properties | Length: 499 Molecular Weight: 54150.5 Isoelectric Point: 9.1854 |
Chromosome | Chromosome/Scaffold: 000088 Start: 42514 End: 45518 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 111 | 460 | 0 |
ERGGGQLNVPPGRWLTAPFNLTSHMTLFLAEGAEILGIPDEKYWPLMPALPSYGYGRERKGPRFGSLIHGQNLRDVVITGHNGSINGQGEVWWMKHHRRM LNNTRPPLVQLMWSKDIIVANITLRNSPFWHFHPYDCTNVTVSNVTILSPVSGAPNTDGIDPDSCQDVLIENCYISVGDDAIAVKSGWDQYGIAYGRPSS NISIRNVTARSLVSAGISIGSEMSGGVANVTVENVRIWESRRGVRIKTATGRGGYIRNISYRNITFDNVRAGIVIKVDYNEHADDGYDRNAFPDITSISF KEIHGRGVRVPVRAHGSDVIPVKDISFQDMSVGISYKKKHIFQCSYVEGR |
Full Sequence |
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Protein Sequence Length: 499 Download |
MVETGGGRLH QRRGAAAFVA ANRTLLAAAW VVGFALVFLW QSASISLRSG GGGSGGVLLG 60 LLSGPLPPPR PAPRLRPAAY NLTDFGGVGD GRALNTGAFE RAVEAIAALA ERGGGQLNVP 120 PGRWLTAPFN LTSHMTLFLA EGAEILGIPD EKYWPLMPAL PSYGYGRERK GPRFGSLIHG 180 QNLRDVVITG HNGSINGQGE VWWMKHHRRM LNNTRPPLVQ LMWSKDIIVA NITLRNSPFW 240 HFHPYDCTNV TVSNVTILSP VSGAPNTDGI DPDSCQDVLI ENCYISVGDD AIAVKSGWDQ 300 YGIAYGRPSS NISIRNVTAR SLVSAGISIG SEMSGGVANV TVENVRIWES RRGVRIKTAT 360 GRGGYIRNIS YRNITFDNVR AGIVIKVDYN EHADDGYDRN AFPDITSISF KEIHGRGVRV 420 PVRAHGSDVI PVKDISFQDM SVGISYKKKH IFQCSYVEGR VIGSVFPKPC ENLDVYNEQG 480 QLVKRAVSLN STELDYDI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-29 | 81 | 415 | 353 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-30 | 84 | 470 | 401 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 5.0e-35 | 81 | 442 | 372 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-41 | 178 | 457 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-65 | 80 | 432 | 391 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY87758.1 | 0 | 1 | 486 | 1 | 506 | hypothetical protein OsI_09176 [Oryza sativa Indica Group] |
RefSeq | NP_001140630.1 | 0 | 78 | 498 | 75 | 495 | hypothetical protein LOC100272705 [Zea mays] |
RefSeq | XP_002324728.1 | 0 | 8 | 498 | 17 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 8 | 498 | 17 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002452925.1 | 0 | 1 | 498 | 1 | 500 | hypothetical protein SORBIDRAFT_04g035020 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 73 | 439 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 73 | 439 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 73 | 439 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 73 | 439 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 4e-24 | 124 | 444 | 52 | 374 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |