Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00038832m |
Family | CE8 |
Protein Properties | Length: 353 Molecular Weight: 38490 Isoelectric Point: 9.5947 |
Chromosome | Chromosome/Scaffold: 056330 Start: 2563 End: 4338 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 65 | 342 | 0 |
EEFKTVQSAIDAVPAGNAEWIIVHLRSGVHKGKVVIPKNKPFIFVRGNGKGRTSISHESASPDNAESAAFTVNADNVIVFGISFRNTARAGLVNNQEIRS VSAMVAGDKVAFYHCAFYSPHHTLFDSAGRHYYESCYIQGNIDFIFGSGQSIFQCPEIFVKPDRRTEILGSITAQDRKVDDDTSGFVFLKGKVYGVGEVY LGRVTAPDSRVIFADTYLSKTINPAGWTTIGYTGSTDKVMLAEFNCTGPGSDAAKRVPWSRRFTMNEATKYLSVDFIN |
Full Sequence |
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Protein Sequence Length: 353 Download |
MARLCRLRLR LLPLLLLAAA AVLTSAPGGA LAKSKLAKKS DDIVNGPLLT DKLKAKRTLI 60 VGPDEEFKTV QSAIDAVPAG NAEWIIVHLR SGVHKGKVVI PKNKPFIFVR GNGKGRTSIS 120 HESASPDNAE SAAFTVNADN VIVFGISFRN TARAGLVNNQ EIRSVSAMVA GDKVAFYHCA 180 FYSPHHTLFD SAGRHYYESC YIQGNIDFIF GSGQSIFQCP EIFVKPDRRT EILGSITAQD 240 RKVDDDTSGF VFLKGKVYGV GEVYLGRVTA PDSRVIFADT YLSKTINPAG WTTIGYTGST 300 DKVMLAEFNC TGPGSDAAKR VPWSRRFTMN EATKYLSVDF INGKDWLPAY YY* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02176 | PLN02176 | 1.0e-69 | 57 | 347 | 299 | + putative pectinesterase | ||
PLN02432 | PLN02432 | 8.0e-70 | 66 | 347 | 283 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 4.0e-71 | 52 | 348 | 312 | + pectinesterase family protein | ||
PLN02497 | PLN02497 | 6.0e-83 | 67 | 347 | 287 | + probable pectinesterase | ||
PLN02480 | PLN02480 | 0 | 41 | 351 | 313 | + Probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU23222.1 | 0 | 30 | 350 | 23 | 345 | unknown [Glycine max] |
GenBank | EAZ26679.1 | 0 | 24 | 290 | 20 | 283 | hypothetical protein OsJ_10583 [Oryza sativa Japonica Group] |
RefSeq | NP_001049912.1 | 0 | 24 | 352 | 20 | 345 | Os03g0309400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001146436.1 | 0 | 41 | 352 | 36 | 346 | hypothetical protein LOC100280019 [Zea mays] |
RefSeq | XP_002457946.1 | 0 | 41 | 352 | 36 | 346 | hypothetical protein SORBIDRAFT_03g022950 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1e-28 | 66 | 349 | 18 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-23 | 66 | 347 | 14 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.000000002 | 65 | 348 | 16 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.000000002 | 65 | 348 | 16 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.000000002 | 65 | 348 | 16 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |