Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00038911m |
Family | CE8 |
Protein Properties | Length: 194 Molecular Weight: 21607.1 Isoelectric Point: 7.4165 |
Chromosome | Chromosome/Scaffold: 057671 Start: 518 End: 1213 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 5 | 184 | 0 |
QGGQAVAFRISGDKAFFFGCGFYGAQDTLCDDAGRHYFRDCYIEGSIDFVFGNARSLYKDCELRSTAERYGSVAAHGRRDPCERTGFAFVNCRVTGTGRL YVGRAMGQYSRIVYAYTYFDSVIAPGGWDDWDHTSNKSMTAFFGMYRNWGPGVDAAHGVPWARELDYFAARPFLGKSFVN |
Full Sequence |
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Protein Sequence Length: 194 Download |
MPGTQGGQAV AFRISGDKAF FFGCGFYGAQ DTLCDDAGRH YFRDCYIEGS IDFVFGNARS 60 LYKDCELRST AERYGSVAAH GRRDPCERTG FAFVNCRVTG TGRLYVGRAM GQYSRIVYAY 120 TYFDSVIAPG GWDDWDHTSN KSMTAFFGMY RNWGPGVDAA HGVPWARELD YFAARPFLGK 180 SFVNGYHWLT PDV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 4.0e-70 | 2 | 191 | 192 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 3.0e-74 | 2 | 191 | 199 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 6.0e-77 | 2 | 189 | 188 | + pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-86 | 2 | 191 | 190 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 8.0e-139 | 1 | 191 | 191 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACL53825.1 | 0 | 1 | 193 | 157 | 349 | unknown [Zea mays] |
EMBL | CAD41229.2 | 0 | 1 | 193 | 152 | 344 | OSJNBa0010H02.16 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001053508.1 | 0 | 1 | 193 | 11 | 203 | Os04g0553500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_199561.1 | 0 | 1 | 191 | 169 | 359 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002448293.1 | 0 | 1 | 193 | 158 | 350 | hypothetical protein SORBIDRAFT_06g024730 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 3e-27 | 8 | 189 | 113 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4e-27 | 8 | 189 | 109 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.0000000001 | 8 | 98 | 129 | 227 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.0000000001 | 8 | 98 | 129 | 227 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.0000000001 | 8 | 98 | 129 | 227 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FE657998 | 194 | 1 | 194 | 0 |
FE657997 | 194 | 1 | 194 | 0 |
FL691776 | 194 | 1 | 194 | 0 |
CO445615 | 194 | 1 | 194 | 0 |
DV509227 | 189 | 6 | 194 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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