y
Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00038949m |
Family | GH14 |
Protein Properties | Length: 489 Molecular Weight: 55424.8 Isoelectric Point: 4.8712 |
Chromosome | Chromosome/Scaffold: 058448 Start: 1943 End: 4857 |
Description | beta-amylase 5 |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH14 | 13 | 432 | 0 |
YVMLPLDIITVNNTFEKADETRAQLQKLVEAGADGVMIDVWWGLVEGKAPGVYDWSAYKQVFKLVQEAGLKLQAIMSCHQCGGNVGDVVNIPIPQWVRDV GEANPDIFYTNRRKMRNIEYLTIGVDDQPLFQGRTAIQLYADYMKSFRENMAEFLDAGVIVDIEVGLGPAGEMRYPSYPQSQGWVYPGVGEFICYDKYLE ADFKAAATKAGHPEWELPDDAGEYNDTPEKTQFFVDNGTYQTEKGKFFLTWYSNKLIKHGDKILDEANKVFLGCRVQLAIKISGIHWWYRVPNHAAELTA GYYNLDDRDGYRTIAHMLTRHRASMNFTCAEMRDNEQSSEAKSAPEELVQQVLSAGWREGLNIACENALSRYDATAYNTILRNARPQGINKNGPPEHKLY GFTYLRVSSELLEGQNYATF |
Full Sequence |
---|
Protein Sequence Length: 489 Download |
MAGNLLENYV QVYVMLPLDI ITVNNTFEKA DETRAQLQKL VEAGADGVMI DVWWGLVEGK 60 APGVYDWSAY KQVFKLVQEA GLKLQAIMSC HQCGGNVGDV VNIPIPQWVR DVGEANPDIF 120 YTNRRKMRNI EYLTIGVDDQ PLFQGRTAIQ LYADYMKSFR ENMAEFLDAG VIVDIEVGLG 180 PAGEMRYPSY PQSQGWVYPG VGEFICYDKY LEADFKAAAT KAGHPEWELP DDAGEYNDTP 240 EKTQFFVDNG TYQTEKGKFF LTWYSNKLIK HGDKILDEAN KVFLGCRVQL AIKISGIHWW 300 YRVPNHAAEL TAGYYNLDDR DGYRTIAHML TRHRASMNFT CAEMRDNEQS SEAKSAPEEL 360 VQQVLSAGWR EGLNIACENA LSRYDATAYN TILRNARPQG INKNGPPEHK LYGFTYLRVS 420 SELLEGQNYA TFKTFVRRMH ANLDYNANID PLAPMERSKP EIPIEKILEV AQPKLEPFPF 480 IENTDLPI* 540 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02705 | PLN02705 | 7.0e-128 | 9 | 440 | 436 | + beta-amylase | ||
PLN00197 | PLN00197 | 3.0e-160 | 10 | 439 | 434 | + beta-amylase; Provisional | ||
PLN02905 | PLN02905 | 1.0e-162 | 9 | 440 | 436 | + beta-amylase | ||
PLN02803 | PLN02803 | 9.0e-178 | 10 | 439 | 433 | + beta-amylase | ||
PLN02801 | PLN02801 | 0 | 4 | 488 | 489 | + beta-amylase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD15902.1 | 0 | 1 | 488 | 1 | 488 | beta-amylase [Zea mays] |
DDBJ | BAC83773.1 | 0 | 1 | 488 | 1 | 488 | putative beta-amylase [Oryza sativa Japonica Group] |
DDBJ | BAH93971.1 | 0 | 1 | 488 | 942 | 1429 | Os07g0543200 [Oryza sativa Japonica Group] |
RefSeq | NP_001059907.1 | 0 | 1 | 488 | 533 | 1020 | Os07g0543300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001105496.1 | 0 | 1 | 488 | 1 | 488 | beta amylase5 [Zea mays] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2xgi_A | 0 | 1 | 488 | 1 | 488 | A Chain A, The Soluble Domain Structure Of The Zntb Zn2+ Efflux System |
PDB | 2xgb_A | 0 | 1 | 488 | 1 | 488 | A Chain A, The Soluble Domain Structure Of The Zntb Zn2+ Efflux System |
PDB | 2xg9_A | 0 | 1 | 488 | 1 | 488 | A Chain A, The Soluble Domain Structure Of The Zntb Zn2+ Efflux System |
PDB | 2xfy_A | 0 | 1 | 488 | 1 | 488 | A Chain A, The Soluble Domain Structure Of The Zntb Zn2+ Efflux System |
PDB | 2xfr_A | 0 | 1 | 488 | 1 | 488 | A Chain A, The Soluble Domain Structure Of The Zntb Zn2+ Efflux System |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
HO777976 | 470 | 26 | 488 | 0 |
HO803971 | 393 | 88 | 473 | 0 |
DV507828 | 283 | 32 | 314 | 0 |
DY266204 | 323 | 158 | 480 | 0 |
FL781315 | 262 | 103 | 364 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|