Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00038988m |
Family | GH28 |
Protein Properties | Length: 446 Molecular Weight: 47892.4 Isoelectric Point: 9.2633 |
Chromosome | Chromosome/Scaffold: 055093 Start: 1930 End: 5217 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 73 | 418 | 0 |
RRRGGTELRVPAGTWLTGSFNLTSHMTLFLARGAVLKATRDAAGWPLVEPLPSYGRGRELPGPRYASFINGNGLRDVVITGDKGVIDGQGEVWWNMWRQR TLQHTRPNLVEFMHSTGIHISNIVLKNSPFWNIHPVYCDNVVVTNMMILAPHDSPNTDGVDPDSSTNVCIEDSYISTGDDLVAIKSGWDEYGIAYGRPSS GITIRRVRGSSPFSGIAIGSEASGGVRDVLVEDCSIFNSGYGIHIKTNVGRGGYIRNVTVDNVRMSGVRSGVRIAGDVGDHPDGRFSQLAVPTVDAVRIR NVWGVGVQQPGSLEGIRNSPFTRICLSNVKLFGWRSGAAWRCRDVR |
Full Sequence |
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Protein Sequence Length: 446 Download |
MAAPPLLLLV GALALLAQEQ VARCDAAATC VGVAPAKRRP EVVSIADFGG VGDGRTLNTW 60 AFRKAVYRIQ HRRRRGGTEL RVPAGTWLTG SFNLTSHMTL FLARGAVLKA TRDAAGWPLV 120 EPLPSYGRGR ELPGPRYASF INGNGLRDVV ITGDKGVIDG QGEVWWNMWR QRTLQHTRPN 180 LVEFMHSTGI HISNIVLKNS PFWNIHPVYC DNVVVTNMMI LAPHDSPNTD GVDPDSSTNV 240 CIEDSYISTG DDLVAIKSGW DEYGIAYGRP SSGITIRRVR GSSPFSGIAI GSEASGGVRD 300 VLVEDCSIFN SGYGIHIKTN VGRGGYIRNV TVDNVRMSGV RSGVRIAGDV GDHPDGRFSQ 360 LAVPTVDAVR IRNVWGVGVQ QPGSLEGIRN SPFTRICLSN VKLFGWRSGA AWRCRDVRGA 420 ALGVHPSPCA ELATSFASAA GSCSY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 5.0e-23 | 34 | 436 | 430 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-28 | 43 | 440 | 414 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 5.0e-30 | 38 | 405 | 384 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 9.0e-34 | 140 | 417 | 285 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-54 | 42 | 357 | 339 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN33336.1 | 0 | 5 | 444 | 9 | 451 | unknown [Zea mays] |
GenBank | ACN36471.1 | 0 | 98 | 444 | 1 | 347 | unknown [Zea mays] |
GenBank | EAY85246.1 | 0 | 23 | 445 | 21 | 443 | hypothetical protein OsI_06620 [Oryza sativa Indica Group] |
RefSeq | NP_001046468.1 | 0 | 23 | 445 | 21 | 443 | Os02g0256100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002451891.1 | 0 | 29 | 444 | 31 | 448 | hypothetical protein SORBIDRAFT_04g009310 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 5.99994e-41 | 38 | 407 | 19 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 5.99994e-41 | 38 | 407 | 19 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 5.99994e-41 | 38 | 407 | 19 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 5.99994e-41 | 38 | 407 | 19 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-20 | 77 | 418 | 39 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |