CAZyme Information

Basic Information
SpeciesPanicum virgatum
Cazyme IDPavirv00039421m
FamilyGT4
Protein PropertiesLength: 501 Molecular Weight: 55146.2 Isoelectric Point: 7.9229
ChromosomeChromosome/Scaffold: 057328 Start: 2247 End: 3749
DescriptionUDP-Glycosyltransferase superfamily protein
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GT43164577.5e-27
  VLGVSGRLVKDKGHPLLYEAFSKLVLRHPNVYLLIAGKGPWENRYLDLGRNAKVLGAVPPAKLKAFYNALDVFVDPTLRPQGLDLTLMEAMQCGKPVVAT
  RFPSIKGSIVVDGEFGHMFAPNAESLVESLEAVVAEGARRAA
Full Sequence
Protein Sequence     Length: 501     Download
MALLTSPPRL RKQRCPPHTM LSLSPSVLSL ILLIPFLSLL LLHRSSFPGS SCAPALAGAA    60
SRRDSVDGFS GDLRDIDFSW NHLPFSASRP PAAKLKIAVF SRKWPVASAP GGMERHAHTL    120
HTALAARGHR VHVFTSPPPH TEAAPSPSPD GPHIHFLDGE PGQWRCDEAW KLYETEGEND    180
PFDVIHSESV AVFHRWARGV DNLVVSWHGI SLEALHSGIF QDLARGEDEP MSPALNQTLG    240
QSVFRVLSEV RFFRSYAHQV AISDSTGEML RDVYQIPSRR VHVILNGVDE AQFEPDYALG    300
RAFREEVGVP RGADLVLGVS GRLVKDKGHP LLYEAFSKLV LRHPNVYLLI AGKGPWENRY    360
LDLGRNAKVL GAVPPAKLKA FYNALDVFVD PTLRPQGLDL TLMEAMQCGK PVVATRFPSI    420
KGSIVVDGEF GHMFAPNAES LVESLEAVVA EGARRAARRG RACREYARSM FAATKMALAY    480
ERLFLCVKNE TFCVYPAEFD * 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd03807GT1_WbnK_like1.0e-31245484250+
TIGR00032argG9.0e-33127446342+
cd03811GT1_WabH_like4.0e-36111441343+
cd03798GT1_wlbH_like6.0e-41111446358+
cd03801GT1_YqgM_like2.0e-5296446364+
Gene Ontology
GO TermDescription
GO:0009058biosynthetic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankEAZ12928.10205001485hypothetical protein OsJ_02849 [Oryza sativa Japonica Group]
RefSeqNP_001043742.1015001503Os01g0653200 [Oryza sativa (japonica cultivar-group)]
RefSeqXP_002271072.105349638493PREDICTED: hypothetical protein [Vitis vinifera]
RefSeqXP_002303479.101749510488predicted protein [Populus trichocarpa]
RefSeqXP_002456068.1015001500hypothetical protein SORBIDRAFT_03g029770 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB2gek_A0.00000000000811046834366A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp
PDB2gej_A0.00000000000811046834366A Chain A, Crystal Structure Of Phosphatidylinositol Mannosyltransferase (Pima) From Mycobacterium Smegmatis In Complex With Gdp-Man
PDB3c48_B0.00000002265479191419A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The First Step In Mycothiol Biosynthesis. Organism: Corynebacterium Glutamicum- Apo (Open) Structure.
PDB3c48_A0.00000002265479191419A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The First Step In Mycothiol Biosynthesis. Organism: Corynebacterium Glutamicum- Apo (Open) Structure.
PDB3c4v_B0.00000002265479171399A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The First Step In Mycothiol Biosynthesis. Organism: Corynebacterium Glutamicum- Apo (Open) Structure.
Transmembrane Domains
StartEnd
2143
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
GR3494822352124460
AM7324152671804460
HX1845662162865010
GR1862222581894460
CA224830246482930
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_055_00071.1Aquca_004_00554.1
Arabidopsis lyrata316266919149492915
Arabidopsis thalianaAT1G73160.1AT5G59070.1AT4G19460.1
Brachypodium distachyonBradi2g45370.1
Brassica rapaBra012542Bra003857Bra013399Bra020331
Carica papayaevm.model.supercontig_305.3
Capsella rubellaCarubv10004612mCarubv10021524m
Citrus clementinaCiclev10008126mCiclev10003490m
Citrus sinensisorange1.1g039338morange1.1g044542m
Cucumis sativusCucsa.268510.1
Eucalyptus grandisEucgr.E01172.1Eucgr.F03250.1
Fragaria vescamrna27708.1-v1.0-hybridmrna27178.1-v1.0-hybrid
Glycine maxGlyma09g34990.1Glyma01g35440.1Glyma16g17250.1Glyma16g08210.1
Gossypium raimondiiGorai.009G372800.1Gorai.008G217900.1
Linum usitatissimumLus10032187Lus10014499Lus10033297Lus10034760
Malus domesticaMDP0000252217MDP0000510770MDP0000280727MDP0000690085
Manihot esculentacassava4.1_023608mcassava4.1_022788m
Medicago truncatulaMedtr5g026360.1Medtr8g071900.1
Mimulus guttatusmgv1a005617mmgv1a027119m
Oryza sativaLOC_Os01g46430.1
Panicum virgatumPavirv00050283m
Physcomitrella patensPp1s115_97V6.1Pp1s115_97V6.2Pp1s231_59V6.1
Phaseolus vulgarisPhvul.002G124600.1Phvul.003G277200.1
Picea abiesMA_159118g0690MA_58772g0010
Populus trichocarpaPotri.011G097000.1Potri.003G105500.1Potri.001G128300.1
Prunus persicappa004871mppa024212m
Ricinus communis30150.m00047029827.m002616
Setaria italicaSi001150m
Selaginella moellendorffii79637
Sorghum bicolorSb03g029770.1
Thellungiella halophilaThhalv10013459mThhalv10027268mThhalv10019571m
Vitis viniferaGSVIVT01036920001GSVIVT01036921001GSVIVT01036924001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny