| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00039639m |
| Family | CBM57 |
| Protein Properties | Length: 600 Molecular Weight: 64998.6 Isoelectric Point: 6.1598 |
| Chromosome | Chromosome/Scaffold: 056140 Start: 307 End: 4939 |
| Description | Leucine-rich repeat transmembrane protein kinase |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM57 | 411 | 581 | 3.7e-29 |
| FAVDCGGSRTISGSDNSMYQADNANLGAASYYVAGAPTWGVSSVGLFTNAPNGSYIIYSSRQFDNTLDSALFQTARMSPSSLRYYGIGLENGNYTITLQF AEVDFPDIQSWTSRGRRVFDIYIQGERKEQNFDIRKTAGGKSFTVVKKQYVVPVTKNFLEIHLFWAGKGTC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 600 Download |
| MKPRLSCCGF LRGSVFPVLL FLLLLNSWSA AAQAQPAAPQ TDPVEAAAVN AILSKLGLSA 60 PPSWNISGNP CSGAATDDTQ LDDNPAFNPA IKCDCSDQNN TLCHVTRFKI NTLDAVGPIP 120 EELRNLTHLR KLDLRKNYFT GPLPAFIGEL TALESMTVGI NALSGPIPKE LGNLTNLVSL 180 ALGSNNFNGT LPDELGKLTK LRQIYIDSND FSGPLPSTLS QLKNLSILWA SDNNFTGQIP 240 DYLGSLTNLT ELRLQGNSFQ GPIPTSLSNL VKLSKLRIGE IVSGSSPLAF IDNMTSLGEL 300 VLRNSKISDT LASVDFTKFR NLSLLDLSFN NITGQIPQSI LNLPSLSYLD FSYNHLSGNF 360 PSWATEKNLQ LNLVANDFVM DSSNNSILPW GLDCLQRNTP CFLGSPQSAS FAVDCGGSRT 420 ISGSDNSMYQ ADNANLGAAS YYVAGAPTWG VSSVGLFTNA PNGSYIIYSS RQFDNTLDSA 480 LFQTARMSPS SLRYYGIGLE NGNYTITLQF AEVDFPDIQS WTSRGRRVFD IYIQGERKEQ 540 NFDIRKTAGG KSFTVVKKQY VVPVTKNFLE IHLFWAGKGT CCIPSKGYYG PAVSALSATP 600 |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN00113 | PLN00113 | 2.0e-34 | 116 | 388 | 278 | + leucine-rich repeat receptor-like protein kinase; Provisional |
| PLN00113 | PLN00113 | 3.0e-36 | 117 | 392 | 280 | + leucine-rich repeat receptor-like protein kinase; Provisional |
| PLN00113 | PLN00113 | 8.0e-37 | 117 | 361 | 246 | + leucine-rich repeat receptor-like protein kinase; Provisional |
| PLN00113 | PLN00113 | 2.0e-39 | 117 | 378 | 264 | + leucine-rich repeat receptor-like protein kinase; Provisional |
| pfam11721 | Malectin | 1.0e-60 | 410 | 596 | 189 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAD41800.2 | 0 | 1 | 600 | 1 | 620 | OSJNBa0008M17.16 [Oryza sativa (japonica cultivar-group)] |
| EMBL | CAD41882.2 | 0 | 37 | 600 | 28 | 616 | OSJNBa0093O08.1 [Oryza sativa (japonica cultivar-group)] |
| EMBL | CAD41884.2 | 0 | 40 | 600 | 33 | 614 | OSJNBa0093O08.3 [Oryza sativa (japonica cultivar-group)] |
| EMBL | CAJ86312.1 | 0 | 1 | 600 | 1 | 561 | H0525G02.9 [Oryza sativa (indica cultivar-group)] |
| GenBank | EEE61686.1 | 0 | 37 | 600 | 28 | 592 | hypothetical protein OsJ_16159 [Oryza sativa Japonica Group] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3rgz_A | 2e-25 | 116 | 361 | 407 | 673 | A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp |
| PDB | 3rgz_A | 2e-23 | 94 | 411 | 238 | 559 | A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp |
| PDB | 3rgz_A | 1e-17 | 117 | 364 | 432 | 724 | A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp |
| PDB | 3rgz_A | 0.000000000000001 | 122 | 358 | 195 | 382 | A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp |
| PDB | 3rgz_A | 0.0000000003 | 111 | 241 | 592 | 722 | A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp |
