y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00039677m |
Family | AA1 |
Protein Properties | Length: 556 Molecular Weight: 61371.4 Isoelectric Point: 9.3502 |
Chromosome | Chromosome/Scaffold: 056966 Start: 224 End: 3898 |
Description | SKU5 similar 5 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA1 | 60 | 510 | 0 |
EGILINGQFPGPQIDAVTNDNIIVNVFNNLPVPFLLSWQGIQQRRSSWQDGVYGTNCPIPPGGNFTYNMQFKDQIGSYYYFPSLLFHKAAGGYGGIRVLS RPRIPVPFDPPASDFTIMAGDWFKLNHTDLKGILDSGNDLPFPDGLLINGQGSNGNRFTVGQGKTYRFRVSNVGIATSVIIRIQGHSMLLVEVEGSHTMQ ATFTSIDIHLGQSYSFLVTADQPPADYSIIVSTRFTTPVLTTTAILHYSNANGAATVLPPLAPTTEIDFSLNQARSIRWNLTASGPRPNPQGSYHYGLVN TTRTIRLANSRATINGKLRYAVNSISFIPADTPLKVADFYNISGVFTLGSMPDNPTGGGAYLQTSVMAANMREYVEIIFQNAENFVQSWHIDGYAFWVVG MDGGQWTPASRQGYNLRDAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSES |
Full Sequence |
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Protein Sequence Length: 556 Download |
MEAPSSSSAR PNRRLLLAAA AAALLLASSH LLAARADDPY RFYTWNVTFG DIYPLGVKQE 60 GILINGQFPG PQIDAVTNDN IIVNVFNNLP VPFLLSWQGI QQRRSSWQDG VYGTNCPIPP 120 GGNFTYNMQF KDQIGSYYYF PSLLFHKAAG GYGGIRVLSR PRIPVPFDPP ASDFTIMAGD 180 WFKLNHTDLK GILDSGNDLP FPDGLLINGQ GSNGNRFTVG QGKTYRFRVS NVGIATSVII 240 RIQGHSMLLV EVEGSHTMQA TFTSIDIHLG QSYSFLVTAD QPPADYSIIV STRFTTPVLT 300 TTAILHYSNA NGAATVLPPL APTTEIDFSL NQARSIRWNL TASGPRPNPQ GSYHYGLVNT 360 TRTIRLANSR ATINGKLRYA VNSISFIPAD TPLKVADFYN ISGVFTLGSM PDNPTGGGAY 420 LQTSVMAANM REYVEIIFQN AENFVQSWHI DGYAFWVVGM DGGQWTPASR QGYNLRDAIA 480 RYTLQVYPQS WTAIYMPLDN VGMWNVRSES WARQYLGQQF YLRVYSPANS WRDENPIPKN 540 ALLCGRASGR RTRPL* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02991 | PLN02991 | 0 | 37 | 555 | 520 | + oxidoreductase | ||
PLN02835 | PLN02835 | 0 | 37 | 552 | 516 | + oxidoreductase | ||
PLN02792 | PLN02792 | 0 | 37 | 552 | 519 | + oxidoreductase | ||
PLN02354 | PLN02354 | 0 | 37 | 549 | 521 | + copper ion binding / oxidoreductase | ||
PLN02168 | PLN02168 | 0 | 39 | 548 | 521 | + copper ion binding / pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005507 | copper ion binding |
GO:0016491 | oxidoreductase activity |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ02087.1 | 0 | 35 | 555 | 21 | 542 | hypothetical protein OsI_24168 [Oryza sativa Indica Group] |
GenBank | EAZ38022.1 | 0 | 26 | 555 | 1 | 532 | hypothetical protein OsJ_22366 [Oryza sativa Japonica Group] |
RefSeq | NP_001058365.1 | 0 | 35 | 555 | 21 | 542 | Os06g0678800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001147597.1 | 0 | 1 | 555 | 5 | 548 | LOC100281206 [Zea mays] |
RefSeq | XP_002438855.1 | 0 | 34 | 555 | 25 | 546 | hypothetical protein SORBIDRAFT_10g027270 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1asq_B | 0 | 41 | 545 | 4 | 539 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1asq_A | 0 | 41 | 545 | 4 | 539 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1asp_B | 0 | 41 | 545 | 4 | 539 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1asp_A | 0 | 41 | 545 | 4 | 539 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1aso_B | 0 | 41 | 545 | 4 | 539 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |