| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00039678m |
| Family | AA1 |
| Protein Properties | Length: 429 Molecular Weight: 47497.7 Isoelectric Point: 9.5396 |
| Chromosome | Chromosome/Scaffold: 056966 Start: 224 End: 2580 |
| Description | SKU5 similar 5 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA1 | 2 | 383 | 0 |
| QFKDQIGSYYYFPSLLFHKAAGGYGGIRVLSRPRIPVPFDPPASDFTIMAGDWFKLNHTDLKGILDSGNDLPFPDGLLINGQGSNGNRFTVGQGKTYRFR VSNVGIATSVIIRIQGHSMLLVEVEGSHTMQATFTSIDIHLGQSYSFLVTADQPPADYSIIVSTRFTTPVLTTTAILHYSNANGAATVLPPLAPTTEIDF SLNQARSIRWNLTASGPRPNPQGSYHYGLVNTTRTIRLANSRATINGKLRYAVNSISFIPADTPLKVADFYNISGVFTLGSMPDNPTGGGAYLQTSVMAA NMREYVEIIFQNAENFVQSWHIDGYAFWVVGMDGGQWTPASRQGYNLRDAIARYTLQVYPQSWTAIYMPLDNVGMWNVRSES | |||
| Full Sequence |
|---|
| Protein Sequence Length: 429 Download |
| MQFKDQIGSY YYFPSLLFHK AAGGYGGIRV LSRPRIPVPF DPPASDFTIM AGDWFKLNHT 60 DLKGILDSGN DLPFPDGLLI NGQGSNGNRF TVGQGKTYRF RVSNVGIATS VIIRIQGHSM 120 LLVEVEGSHT MQATFTSIDI HLGQSYSFLV TADQPPADYS IIVSTRFTTP VLTTTAILHY 180 SNANGAATVL PPLAPTTEID FSLNQARSIR WNLTASGPRP NPQGSYHYGL VNTTRTIRLA 240 NSRATINGKL RYAVNSISFI PADTPLKVAD FYNISGVFTL GSMPDNPTGG GAYLQTSVMA 300 ANMREYVEII FQNAENFVQS WHIDGYAFWV VGMDGGQWTP ASRQGYNLRD AIARYTLQVY 360 PQSWTAIYMP LDNVGMWNVR SESWARQYLG QQFYLRVYSP ANSWRDENPI PKNALLCGRA 420 SGRRTRPL* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02168 | PLN02168 | 2.0e-154 | 2 | 421 | 431 | + copper ion binding / pectinesterase |
| PLN02991 | PLN02991 | 0 | 1 | 428 | 429 | + oxidoreductase |
| PLN02792 | PLN02792 | 0 | 1 | 425 | 428 | + oxidoreductase |
| PLN02835 | PLN02835 | 0 | 1 | 425 | 425 | + oxidoreductase |
| PLN02354 | PLN02354 | 0 | 2 | 422 | 429 | + copper ion binding / oxidoreductase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN28536.1 | 0 | 1 | 428 | 1 | 428 | unknown [Zea mays] |
| GenBank | EAZ38022.1 | 0 | 1 | 428 | 104 | 532 | hypothetical protein OsJ_22366 [Oryza sativa Japonica Group] |
| RefSeq | NP_001058365.1 | 0 | 1 | 428 | 114 | 542 | Os06g0678800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001147597.1 | 0 | 1 | 428 | 121 | 548 | LOC100281206 [Zea mays] |
| RefSeq | XP_002438855.1 | 0 | 1 | 428 | 119 | 546 | hypothetical protein SORBIDRAFT_10g027270 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1asq_B | 4e-33 | 5 | 418 | 96 | 539 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1asq_A | 4e-33 | 5 | 418 | 96 | 539 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1asp_B | 4e-33 | 5 | 418 | 96 | 539 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1asp_A | 4e-33 | 5 | 418 | 96 | 539 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1aso_B | 4e-33 | 5 | 418 | 96 | 539 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DT338359 | 324 | 94 | 417 | 0 |
| HO188369 | 284 | 42 | 324 | 0 |
| FE636208 | 266 | 117 | 382 | 0 |
| HO801725 | 426 | 1 | 424 | 0 |
| HO852127 | 310 | 120 | 429 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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