Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00039944m |
Family | GT8 |
Protein Properties | Length: 615 Molecular Weight: 71037 Isoelectric Point: 7.9426 |
Chromosome | Chromosome/Scaffold: 053946 Start: 216 End: 2594 |
Description | galacturonosyltransferase 3 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 262 | 586 | 0 |
CLHMQLTTDYYFRDGVTKEHFHDAALKEEENKAKLEDRSLYHYAIFSDNVLAASVVVRSTVTNANEPEKHVFHIVTDRLNFAAMKMWFIAHPPQLAIVHV ENIDNFKWLNSSYCSVLRQLESARLKEYYFKAHDPSSLSDGNENLKYRNPKYLSMLNHLRFYMTEIHPKLDKILFLDDDIVVQKDLTPLWDIDLKGMVNG AIETCKESFHRFDTYLNFSHPKISENFDPRACGWAFGMNMFDLKEWRKRNITGIYHYWQDLNEDRKLWKLGTLPPGLITFYNLTYPLNRTWHVLGLGYDP AVDIAEIDNAAVVHYNGNYKPWLDL |
Full Sequence |
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Protein Sequence Length: 615 Download |
DVGSADKTIA YTDQYGRIKL FKVTAREFAS SSIWENPWLP RDSQPIARTQ EAAEDLLLAN 60 GSEATNLSSA ETLETKSVDP IKLKRQVFRR RRKEQRVQEL LQVDKKVELE MRNAAINSSR 120 NFDNKVRGSY NIWRPEFRLT NTDSTLRLMK DQIIMAKLYA TIALSQKEPD MYALLMKCIK 180 ESKTAIGDAL IDSELDSSAL ERAKAMGHVL SSARDVLYSS SEVSRKLRVM LQSTELDIDA 240 VKKQNSFLVQ HAAKTVPMPL HCLHMQLTTD YYFRDGVTKE HFHDAALKEE ENKAKLEDRS 300 LYHYAIFSDN VLAASVVVRS TVTNANEPEK HVFHIVTDRL NFAAMKMWFI AHPPQLAIVH 360 VENIDNFKWL NSSYCSVLRQ LESARLKEYY FKAHDPSSLS DGNENLKYRN PKYLSMLNHL 420 RFYMTEIHPK LDKILFLDDD IVVQKDLTPL WDIDLKGMVN GAIETCKESF HRFDTYLNFS 480 HPKISENFDP RACGWAFGMN MFDLKEWRKR NITGIYHYWQ DLNEDRKLWK LGTLPPGLIT 540 FYNLTYPLNR TWHVLGLGYD PAVDIAEIDN AAVVHYNGNY KPWLDLAISK YNPYWSKYVD 600 LGSSHVQHCY ASKQ* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02718 | PLN02718 | 3.0e-149 | 104 | 609 | 515 | + Probable galacturonosyltransferase | ||
PLN02523 | PLN02523 | 9.0e-165 | 194 | 609 | 422 | + galacturonosyltransferase | ||
PLN02742 | PLN02742 | 1.0e-176 | 139 | 609 | 476 | + Probable galacturonosyltransferase | ||
PLN02910 | PLN02910 | 0 | 11 | 613 | 618 | + polygalacturonate 4-alpha-galacturonosyltransferase | ||
PLN02829 | PLN02829 | 0 | 143 | 609 | 467 | + Probable galacturonosyltransferase |
Gene Ontology | |
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GO Term | Description |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM18739.1 | 0 | 2 | 614 | 40 | 611 | AC092548_17 hypothetical protein [Oryza sativa Japonica Group] |
GenBank | ABB47337.1 | 0 | 2 | 614 | 75 | 686 | Glycosyltransferase QUASIMODO1, putative, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | EAY78177.1 | 0 | 2 | 614 | 66 | 677 | hypothetical protein OsI_33224 [Oryza sativa Indica Group] |
GenBank | EAZ15816.1 | 0 | 2 | 614 | 79 | 690 | hypothetical protein OsJ_31235 [Oryza sativa Japonica Group] |
RefSeq | XP_002439065.1 | 0 | 1 | 614 | 84 | 697 | hypothetical protein SORBIDRAFT_10g030870 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ga8_A | 0.00001 | 410 | 583 | 75 | 252 | A Chain A, Arabidopsis Thaliana Peroxidase N |
PDB | 1g9r_A | 0.00001 | 410 | 583 | 75 | 252 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 1ss9_A | 0.00001 | 410 | 583 | 75 | 252 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan biosynthesis | 2.4.1.43-RXN | EC-2.4.1.43 | polygalacturonate 4-α-galacturonosyltransferase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG877878 | 280 | 336 | 615 | 0 |
JG880996 | 291 | 204 | 494 | 0 |
HO782208 | 312 | 298 | 609 | 0 |
HO795725 | 463 | 147 | 609 | 0 |
FG612224 | 291 | 311 | 601 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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