Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00040058m |
Family | CBM43 |
Protein Properties | Length: 394 Molecular Weight: 39041.6 Isoelectric Point: 4.815 |
Chromosome | Chromosome/Scaffold: 058903 Start: 3806 End: 5195 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 1 | 132 | 1e-22 |
MLTIPNEQLEHIAEFQEEADLWVTTYVARFLPAARITHVLAGDDVLTNSPGNAYFLVPAMLNLRSALAAAGLDGRVKVSSAVSAEALAAPAWSGVAGHVL RFLNLAGSPLFLKSRPSEASDAKADAAYAAMR | |||
CBM43 | 181 | 262 | 2.1e-29 |
CVALQSADPAALQAGLNWACGPGHADCSAIQPGGPCYQQNNLPALASYAYNDYYLKMSSTGATCSFNGTATTTTNDPSSGSC |
Full Sequence |
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Protein Sequence Length: 394 Download |
MLTIPNEQLE HIAEFQEEAD LWVTTYVARF LPAARITHVL AGDDVLTNSP GNAYFLVPAM 60 LNLRSALAAA GLDGRVKVSS AVSAEALAAP AWSGVAGHVL RFLNLAGSPL FLKSRPSEAS 120 DAKADAAYAA MRALGVPGVP VIAADLGAAA GEAAAYYYYG YPGGQSGERG KRRSLATGTF 180 CVALQSADPA ALQAGLNWAC GPGHADCSAI QPGGPCYQQN NLPALASYAY NDYYLKMSST 240 GATCSFNGTA TTTTNDPSSG SCVFAGSSTA GGSNSSAPVG ASPPTSLSPP TGFTPPVGSS 300 PPSSDFSPPA VGTTPPFGFA PPAGGGFEPP AGGFGTPPSG FGPPGSFNGS GSFGPSGTLN 360 PYGGCRGAMS GGAGLTALLA VAVAVLLVSM DAT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00332 | Glyco_hydro_17 | 2.0e-12 | 1 | 116 | 127 | + Glycosyl hydrolases family 17. | ||
pfam07983 | X8 | 6.0e-19 | 179 | 251 | 82 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 6.0e-36 | 179 | 264 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC75349.1 | 0 | 1 | 266 | 76 | 352 | hypothetical protein OsI_11774 [Oryza sativa Indica Group] |
RefSeq | NP_001050214.1 | 0 | 1 | 364 | 76 | 450 | Os03g0374600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001150091.1 | 0 | 171 | 308 | 52 | 183 | LOC100283720 [Zea mays] |
RefSeq | XP_002463238.1 | 0 | 171 | 308 | 48 | 179 | hypothetical protein SORBIDRAFT_02g040340 [Sorghum bicolor] |
RefSeq | XP_002467792.1 | 0 | 1 | 392 | 44 | 426 | hypothetical protein SORBIDRAFT_01g034190 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 0.00000000002 | 176 | 264 | 9 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 2cyg_A | 0.000002 | 1 | 116 | 51 | 175 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0.00001 | 1 | 182 | 51 | 276 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0.00001 | 1 | 182 | 51 | 276 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3ur8_B | 0.00003 | 1 | 147 | 53 | 238 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |