Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00040364m |
Family | CBM43 |
Protein Properties | Length: 521 Molecular Weight: 55540.2 Isoelectric Point: 7.3239 |
Chromosome | Chromosome/Scaffold: 055236 Start: 824 End: 4250 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 408 | 487 | 3.4e-25 |
WCVIDNNKDLSNVSASFSAACSNGDCTALSPGGSCSGLGWPGNVSYAFNNYYQQHDQSEDSCDFNGQGLITTVDPSVDDC | |||
GH17 | 68 | 386 | 0 |
VGVNWGFASSHPLPAAQVVQGLLLPNSVPRVRLAVASSDALSALAGTGVAVTVGVPDALLRPLASSTKAAAAWVHDNITRYASSVRFEYISVGDEPFLLS HGQHFQPFVVPAAANIKKALTAAKLSTKIKVVVPCSADTYQNASMLPSKASFRPDVNKTMGELLSFLSNNSSPFMVELYPFLSFQQHKNLSLDYYLFQLM SHPVKDGQNKYDNYFDASIDAVVTSLTNAGFSDMDIIVGSAGWPTDGAVNATPAIAQSFMTGLVNHLAKKSGTPLRPKVPPVETYLFSLLDEDQRNMASG GYERHHGIFTFDGQAKYYA |
Full Sequence |
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Protein Sequence Length: 521 Download |
SCQLAIILDS SKKGLRLSTT APAKYSHLKI APHGTRGNAV QSPPPFAPGL LLLLPFLAVA 60 PPPVASAVGV NWGFASSHPL PAAQVVQGLL LPNSVPRVRL AVASSDALSA LAGTGVAVTV 120 GVPDALLRPL ASSTKAAAAW VHDNITRYAS SVRFEYISVG DEPFLLSHGQ HFQPFVVPAA 180 ANIKKALTAA KLSTKIKVVV PCSADTYQNA SMLPSKASFR PDVNKTMGEL LSFLSNNSSP 240 FMVELYPFLS FQQHKNLSLD YYLFQLMSHP VKDGQNKYDN YFDASIDAVV TSLTNAGFSD 300 MDIIVGSAGW PTDGAVNATP AIAQSFMTGL VNHLAKKSGT PLRPKVPPVE TYLFSLLDED 360 QRNMASGGYE RHHGIFTFDG QAKYYANIGQ GPRSLKNAPD VGYFPSKWCV IDNNKDLSNV 420 SASFSAACSN GDCTALSPGG SCSGLGWPGN VSYAFNNYYQ QHDQSEDSCD FNGQGLITTV 480 DPSVDDCLFP LAIRTSAAAS LHLSLAMFQF LVFWVCIFCL * |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
COG5309 | COG5309 | 0.003 | 302 | 379 | 82 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] |
pfam07983 | X8 | 4.0e-16 | 407 | 475 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. |
smart00768 | X8 | 2.0e-29 | 407 | 489 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
pfam00332 | Glyco_hydro_17 | 8.0e-42 | 123 | 384 | 263 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF95444.1 | 0 | 68 | 520 | 35 | 487 | Glycosyl hydrolases family 17 protein, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ACF78459.1 | 0 | 68 | 520 | 32 | 484 | unknown [Zea mays] |
GenBank | EEC75046.1 | 0 | 68 | 520 | 35 | 487 | hypothetical protein OsI_11151 [Oryza sativa Indica Group] |
RefSeq | NP_001130286.1 | 0 | 68 | 520 | 32 | 484 | hypothetical protein LOC100191380 [Zea mays] |
RefSeq | XP_002468022.1 | 0 | 68 | 502 | 32 | 466 | hypothetical protein SORBIDRAFT_01g038220 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3f55_D | 0 | 68 | 387 | 2 | 314 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
PDB | 3f55_C | 0 | 68 | 387 | 2 | 314 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
PDB | 3f55_B | 0 | 68 | 387 | 2 | 314 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
PDB | 3f55_A | 0 | 68 | 387 | 2 | 314 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
PDB | 3em5_D | 0 | 68 | 387 | 2 | 314 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |