Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00040818m |
Family | GH27 |
Protein Properties | Length: 343 Molecular Weight: 37926.9 Isoelectric Point: 5.2049 |
Chromosome | Chromosome/Scaffold: 054156 Start: 1172 End: 4489 |
Description | Melibiase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH27 | 70 | 267 | 0 |
TCQVRPGSLYHENDDAALFASWGVDYLKYDNCYNLGIRPQKRYPPMRDALNSTGRQIFYSLCEWGQDDPALWAGKVGNSWRTTDDITDTWKSMTDIADKN NKWASYAGPGGWNDPDMLEVGNGGMTFAEYRSHFSIWALMKAPLLIGCDVRNMTSEMMKILSNKEVIQVNQDPLGVQGRKILGEGNYGCREVWAGPLS |
Full Sequence |
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Protein Sequence Length: 343 Download |
TVDALVSTGL AELGYNFVNI DDCWSYVKRG NKDQLLPDPK TFPSGIKALA DYVHGKGLKL 60 GIYSDAGIFT CQVRPGSLYH ENDDAALFAS WGVDYLKYDN CYNLGIRPQK RYPPMRDALN 120 STGRQIFYSL CEWGQDDPAL WAGKVGNSWR TTDDITDTWK SMTDIADKNN KWASYAGPGG 180 WNDPDMLEVG NGGMTFAEYR SHFSIWALMK APLLIGCDVR NMTSEMMKIL SNKEVIQVNQ 240 DPLGVQGRKI LGEGNYGCRE VWAGPLSGNR LAVALWNRCS ETANITMKLP AVGLDESAAY 300 SVRDLWKHET LSENVVGTFG AQVDVHDTKM YIFSPAISVT SI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02899 | PLN02899 | 1.0e-20 | 5 | 239 | 323 | + alpha-galactosidase | ||
PLN03231 | PLN03231 | 6.0e-22 | 5 | 244 | 326 | + putative alpha-galactosidase; Provisional | ||
PLN02692 | PLN02692 | 1.0e-155 | 1 | 335 | 336 | + alpha-galactosidase | ||
PLN02808 | PLN02808 | 2.0e-175 | 1 | 335 | 336 | + alpha-galactosidase | ||
PLN02229 | PLN02229 | 0 | 1 | 342 | 342 | + alpha-galactosidase |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ41098.1 | 0 | 21 | 341 | 80 | 436 | hypothetical protein OsJ_25590 [Oryza sativa Japonica Group] |
GenBank | EEC82687.1 | 0 | 1 | 341 | 86 | 426 | hypothetical protein OsI_27343 [Oryza sativa Indica Group] |
RefSeq | NP_001060639.1 | 0 | 1 | 341 | 84 | 424 | Os07g0679300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001130661.1 | 0 | 1 | 342 | 84 | 425 | hypothetical protein LOC100191764 [Zea mays] |
RefSeq | XP_002461216.1 | 0 | 1 | 342 | 90 | 431 | hypothetical protein SORBIDRAFT_02g042960 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1uas_A | 0 | 1 | 335 | 31 | 361 | A Chain A, Crystal Structure Of Rice Alpha-Galactosidase |
PDB | 1ktc_A | 0 | 3 | 335 | 43 | 386 | A Chain A, Crystal Structure Of Rice Alpha-Galactosidase |
PDB | 1ktb_A | 0 | 3 | 335 | 43 | 386 | A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase |
PDB | 3a5v_A | 0 | 4 | 333 | 34 | 390 | A Chain A, Crystal Structure Of Alpha-Galactosidase I From Mortierella Vinacea |
PDB | 3s5z_B | 0 | 2 | 278 | 42 | 325 | A Chain A, Crystal Structure Of Alpha-Galactosidase I From Mortierella Vinacea |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
melibiose degradation | ALPHAGALACTOSID-RXN | EC-3.2.1.22 | α-galactosidase |
stachyose degradation | RXN-11501 | EC-3.2.1.22 | α-galactosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG947911 | 273 | 20 | 292 | 0 |
HO780204 | 335 | 3 | 337 | 0 |
JG910771 | 254 | 1 | 254 | 0 |
HO804702 | 308 | 35 | 342 | 0 |
GT793496 | 252 | 41 | 292 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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