Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00040986m |
Family | CE8 |
Protein Properties | Length: 217 Molecular Weight: 23894.9 Isoelectric Point: 9.7606 |
Chromosome | Chromosome/Scaffold: 0370063 Start: 256 End: 1107 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 12 | 176 | 1.4e-36 |
RATFTVLSDNFVARRASPSSAQNTYKARDLSKENQAVAALVGGDKSAFYGTDSGDTLCDFRGRHYFHFRRCLVRGGVDFVFGYERQSMYEDCALVSTMPP GPQPRWVTAHARLDAGSPSGLVFKGGAVTGTGRIYLGRAWNGYATVVFYGTRMDSVVVPQGKLDA |
Full Sequence |
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Protein Sequence Length: 217 Download |
PRRRALADVP ARATFTVLSD NFVARRASPS SAQNTYKARD LSKENQAVAA LVGGDKSAFY 60 GTDSGDTLCD FRGRHYFHFR RCLVRGGVDF VFGYERQSMY EDCALVSTMP PGPQPRWVTA 120 HARLDAGSPS GLVFKGGAVT GTGRIYLGRA WNGYATVVFY GTRMDSVVVP QGKLDAPGED 180 RLRVEERVGG KHLTHEEVKR FVDRKFIDDG WLSTQP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02480 | PLN02480 | 5.0e-31 | 7 | 212 | 235 | + Probable pectinesterase | ||
PLN02432 | PLN02432 | 2.0e-32 | 14 | 212 | 222 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 2.0e-32 | 13 | 212 | 228 | + probable pectinesterase | ||
PLN02176 | PLN02176 | 9.0e-34 | 13 | 216 | 231 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 3.0e-41 | 14 | 216 | 225 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC20793.1 | 0 | 13 | 172 | 127 | 286 | pectin methylesterase-like protein [Oryza sativa Japonica Group] |
GenBank | EAZ04973.1 | 2.00386e-43 | 13 | 160 | 129 | 276 | hypothetical protein OsI_27154 [Oryza sativa Indica Group] |
GenBank | EEC82597.1 | 0 | 13 | 172 | 129 | 288 | hypothetical protein OsI_27157 [Oryza sativa Indica Group] |
GenBank | EEE67729.1 | 0 | 13 | 216 | 127 | 345 | hypothetical protein OsJ_25409 [Oryza sativa Japonica Group] |
RefSeq | NP_001060498.1 | 0 | 13 | 172 | 140 | 299 | Os07g0655600 [Oryza sativa (japonica cultivar-group)] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0.000000000001 | 36 | 172 | 96 | 248 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0.000001 | 14 | 183 | 70 | 255 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.001 | 43 | 203 | 152 | 327 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CI251733 | 166 | 13 | 172 | 0 |
BG049099 | 156 | 84 | 217 | 6.99949e-42 |
CJ574696 | 193 | 47 | 217 | 4.00001e-41 |
CD900236 | 157 | 78 | 217 | 1e-39 |
BG273207 | 94 | 82 | 172 | 5e-34 |
Sequence Alignments (This image is cropped. Click for full image.) |
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