CAZyme Information

Basic Information
SpeciesPanicum virgatum
Cazyme IDPavirv00041144m
FamilyGT2
Protein PropertiesLength: 207 Molecular Weight: 22940.6 Isoelectric Point: 9.7628
ChromosomeChromosome/Scaffold: 036933 Start: 4806 End: 6146
DescriptionNucleotide-diphospho-sugar transferases superfamily protein
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GT231441.90001e-40
  NFEIIIVDDGSPDGTQDIVKQLQQVYGKDRVLLRARPRKLGLGTAYLHGLKHASGKFVIIMDADLSHHPKYLPSFIMKQKETGADVVTGTRYVKNGGVHG
  WNLMRKLTSRGANVLAQTLLQPGASDLTGSFRLYKRDVLEDL
Full Sequence
Protein Sequence     Length: 207     Download
DVNFEIIIVD DGSPDGTQDI VKQLQQVYGK DRVLLRARPR KLGLGTAYLH GLKHASGKFV    60
IIMDADLSHH PKYLPSFIMK QKETGADVVT GTRYVKNGGV HGWNLMRKLT SRGANVLAQT    120
LLQPGASDLT GSFRLYKRDV LEDLISSCVS KGYVFQMEMI VRATRKGYHI EEVPITFVDR    180
VFGISKLGGS EIVEYLKGLV YLLLTT* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
pfam00535Glycos_transf_24.0e-323144143+
cd04188DPG_synthase2.0e-344179178+
cd04179DPM_DPG-synthase_like2.0e-601163163+
cd06442DPM1_like1.0e-1151202202+
PLN02726PLN027263.0e-1542206205+
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankEEC76440.10120638243hypothetical protein OsI_14131 [Oryza sativa Indica Group]
RefSeqNP_001051751.10120638243Os03g0824400 [Oryza sativa (japonica cultivar-group)]
RefSeqNP_001140901.10120637242hypothetical protein LOC100272978 [Zea mays]
RefSeqNP_564118.10120641246dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative [Arabidopsis thaliana]
RefSeqXP_002466177.10120637242hypothetical protein SORBIDRAFT_01g002910 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3bcv_B0.00002310034129A Chain A, Crystal Structure Of A Putative Glycosyltransferase From Bacteroides Fragilis
PDB3bcv_A0.00002310034129A Chain A, Crystal Structure Of A Putative Glycosyltransferase From Bacteroides Fragilis
PDB2z87_B0.004378122195A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp- Galnac And Udp
PDB2z87_A0.004378122195A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp- Galnac And Udp
PDB2z86_D0.004378123196A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp
Metabolic Pathways
Pathway NameReactionECProtein Name
dolichyl-diphosphooligosaccharide biosynthesis2.4.1.83-RXNEC-2.4.1.83dolichyl-phosphate β-D-mannosyltransferase
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
CJ60034220712070
JG81903620112010
JG80414120112010
CJ86365720712070
DV53731719842010
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_007_00839.1Aquca_007_00839.2
Arabidopsis lyrata889509
Arabidopsis thalianaAT1G20575.1
Brachypodium distachyonBradi2g19800.1
Brassica rapaBra025828Bra012235
Capsella rubellaCarubv10010457mCarubv10010118m
Chlamydomonas reinhardtiiCre03.g150950.t1.1
Citrus clementinaCiclev10003501m
Citrus sinensisorange1.1g026146m
Cucumis sativusCucsa.272070.1Cucsa.272070.2Cucsa.272070.3Cucsa.272070.4
Eucalyptus grandisEucgr.F01769.1
Fragaria vescamrna01849.1-v1.0-hybrid
Glycine maxGlyma13g24040.2Glyma07g32560.4Glyma07g32560.3Glyma07g32560.1Glyma13g24040.1
Gossypium raimondiiGorai.005G113700.2Gorai.005G113700.1Gorai.005G113700.3Gorai.005G113700.4Gorai.002G116900.2
Gorai.002G116900.1
Linum usitatissimumLus10013228Lus10030748
Malus domesticaMDP0000284475
Manihot esculentacassava4.1_014960mcassava4.1_014955m
Medicago truncatulaMedtr2g097220.1
Mimulus guttatusmgv1a012434m
Oryza sativaLOC_Os03g60939.1
Panicum virgatumPavirv00006084mPavirv00010357mPavirv00010356mPavirv00011250mPavirv00010359m
Physcomitrella patensPp1s182_58V6.1
Phaseolus vulgarisPhvul.003G057700.1
Picea abiesMA_10426906g0010MA_158782g0100.50.214MA_159042g1170
Populus trichocarpaPotri.005G250900.1Potri.002G010300.1Potri.005G250900.2
Prunus persicappa010139m
Ricinus communis30170.m014358
Setaria italicaSi039247mSi037228m
Selaginella moellendorffii98270
Sorghum bicolorSb01g002910.1
Thellungiella halophilaThhalv10008599m
Vitis viniferaGSVIVT01008672001
Volvox carteriVocar20000557m
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny