y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00041462m |
Family | GH14 |
Protein Properties | Length: 679 Molecular Weight: 75370.3 Isoelectric Point: 5.2042 |
Chromosome | Chromosome/Scaffold: 016944 Start: 5103 End: 9434 |
Description | beta-amylase 7 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 244 | 661 | 0 |
YVMLPLGVVNVSGEVMDADELVGQLRVLKAAGVDGVMVDCWWGNVEAHRPQEYNWTGYKRLFQMIRELKLKLQVVMSFHECGGNVGDDVSIPLPHWVTEI GRSNPDIYFTDRAGRRNTECLSWGIDKERVLQGRTAVEVYFDFMRSFRVEFDEYFEDGIISEIEIGLGACGELRYPSYPAKHGWKYPGIGEFQCYDRYLQ KNLRRAAEARGHTIWARGPDNAGHYNSEPNLTGFFCDGGDYDSYYGRFFLNWYSQMLVDHADRVLMLARLAFEGSSIAVKVSGVHWWYKTASHAAELTAG FYNPCNRDGYAPIAAVLKKYDAALNFTCVELRTMDQHEVYPEAFADPEGLVWQVLNAAWDAGIQVASENALPCYDRDGFNKILENAKPLNDPDGRHLFGF TYLRLSKVLFERRNFFEF |
Full Sequence |
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Protein Sequence Length: 679 Download |
MGVKEEDGDE EEEEEEEDDG CYYMDPCPVP VASPAGSGVG GRANYGRRRA REEKERTKLR 60 ERQRRAITGR ILAGLRQHGN YSLRARADIN EVIAALAREA GWVVLPDGTT FPTSSPPPAA 120 AAAQPAPRPV MVAAAPLALA LPLPTSPALP LRGVPPVAAR PISHRPALAP VPSVLLSPPR 180 TAASSRPPAD DVPDGESSHL LAVPVPAPMD PAIAEDAAVA KQVPEVAPRP PERDFAGTPY 240 VPVYVMLPLG VVNVSGEVMD ADELVGQLRV LKAAGVDGVM VDCWWGNVEA HRPQEYNWTG 300 YKRLFQMIRE LKLKLQVVMS FHECGGNVGD DVSIPLPHWV TEIGRSNPDI YFTDRAGRRN 360 TECLSWGIDK ERVLQGRTAV EVYFDFMRSF RVEFDEYFED GIISEIEIGL GACGELRYPS 420 YPAKHGWKYP GIGEFQCYDR YLQKNLRRAA EARGHTIWAR GPDNAGHYNS EPNLTGFFCD 480 GGDYDSYYGR FFLNWYSQML VDHADRVLML ARLAFEGSSI AVKVSGVHWW YKTASHAAEL 540 TAGFYNPCNR DGYAPIAAVL KKYDAALNFT CVELRTMDQH EVYPEAFADP EGLVWQVLNA 600 AWDAGIQVAS ENALPCYDRD GFNKILENAK PLNDPDGRHL FGFTYLRLSK VLFERRNFFE 660 FERFVKRMHG EAVLDLQV* 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02705 | PLN02705 | 4.0e-15 | 66 | 111 | 46 | + beta-amylase | ||
PLN02905 | PLN02905 | 3.0e-20 | 66 | 111 | 46 | + beta-amylase | ||
PLN02905 | PLN02905 | 0 | 216 | 678 | 463 | + beta-amylase | ||
PLN02705 | PLN02705 | 0 | 231 | 671 | 441 | + beta-amylase | ||
PLN02801 | PLN02801 | 0 | 240 | 671 | 438 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG29023.1 | 0 | 113 | 678 | 3 | 567 | beta-amylase [Zea mays] |
GenBank | EEC85090.1 | 0 | 46 | 678 | 46 | 651 | hypothetical protein OsI_32458 [Oryza sativa Indica Group] |
GenBank | EEE70265.1 | 0 | 46 | 678 | 45 | 650 | hypothetical protein OsJ_30408 [Oryza sativa Japonica Group] |
RefSeq | XP_002273843.1 | 0 | 40 | 678 | 69 | 699 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002459849.1 | 0 | 209 | 678 | 1 | 469 | hypothetical protein SORBIDRAFT_02g012320 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1byd_A | 0 | 240 | 671 | 11 | 444 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
PDB | 1byc_A | 0 | 240 | 671 | 11 | 444 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
PDB | 1byb_A | 0 | 240 | 671 | 11 | 444 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
PDB | 1bya_A | 0 | 240 | 671 | 11 | 444 | A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With Beta-Maltose And Maltal: Active Site Components And Their Apparent Role In Catalysis |
PDB | 1wdp_A | 0 | 240 | 671 | 11 | 444 | A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With Beta-Maltose And Maltal: Active Site Components And Their Apparent Role In Catalysis |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV021150 | 292 | 326 | 617 | 0 |
CO447286 | 289 | 318 | 606 | 0 |
JG814958 | 249 | 272 | 520 | 0 |
FF359578 | 263 | 280 | 542 | 0 |
DY402216 | 244 | 345 | 588 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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