CAZyme Information

Basic Information
SpeciesPanicum virgatum
Cazyme IDPavirv00041471m
FamilyCBM57
Protein PropertiesLength: 1003 Molecular Weight: 109019 Isoelectric Point: 6.1137
ChromosomeChromosome/Scaffold: 016994 Start: 1326 End: 8801
DescriptionLeucine-rich repeat transmembrane protein kinase
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
CBM573915618.8e-29
  FAVDCGGSRTISGSDNSMYQADNANLGAASYYVAGAPTWGVSSVGLFTNAPNGSYIIYSSRQFDNTLDSALFQTARMSPSSLRYYGIGLENGNYTITLQF
  AEVDFPDIQSWTSRGRRVFDIYIQGERKEQNFDIRKTAGGKSFTVVKKQYVVPVTKNFLEIHLFWAGKGTC
Full Sequence
Protein Sequence     Length: 1003     Download
MKPRLSWSCC GCLHGSVFPG LLFLLLLNSW RAAAQAQPAA PPPQTDPVEA AAVNAILSKL    60
GLSAPPSWNI SGNPCSGAAT DDTQLDDNPA FNPAIKCDCS DQNNTLCHVT RFKINTLDAV    120
GPIPEELRNL THLRKLDLRK NYFTGPLPAF IGELTALESM TVGINALSGP IPKELGNLTN    180
LVSLALGSNN FNGTLPDELG KLTKLRQIYI DSNDFSGPLP STLSQLKNLS ILWASDNNFT    240
GQIPDYLGSL TNLTELRLQG NSFQGPIPTS LSNLVKLSKL VLRNSKISDT LASVDFSKFG    300
NLSLLDLSFN NITGQIPQSI LNLPSLSYLD FSYNHLSGNF PSWATEKNLQ LNLVANDFVM    360
DSSNNSVLPR GLDCLQRNTP CFLDSPQSAS FAVDCGGSRT ISGSDNSMYQ ADNANLGAAS    420
YYVAGAPTWG VSSVGLFTNA PNGSYIIYSS RQFDNTLDSA LFQTARMSPS SLRYYGIGLE    480
NGNYTITLQF AEVDFPDIQS WTSRGRRVFD IYIQGERKEQ NFDIRKTAGG KSFTVVKKQY    540
VVPVTKNFLE IHLFWAGKGT CCIPSKGYYG PAVSALSATP NFVPTVRSSE DSKSNNKTGV    600
IVGVVVGVSV VTLISLAGIF LWCQKRRKLL LELEELYTIL GRPNVFSYGE LRSATENFCS    660
GNLLGEGGYG SVYKGKLSEG RVVAVKQLSQ SSNQGKKQFA AEIETISRVQ HRNLVRLYGC    720
CLESNTPLLV YEYLENGSLD HALFEKGGLH LDWPTRFEIC LGIARGIAYL HEESTVRIVH    780
RDIKASNVLL DADLNPKISD FGLAKLYDDK KTHVSTKVAG TFGYLAPEYA MRGHMTEKVD    840
VFAFGVVALE IVAGESNYQN TFEENTTYIF ERVWELYENG HPLDFVDPKL TEYNGDEVLC    900
VIRAALHCTQ GAPHKRPPMS KVVSMLTGDA ADMAEEVTKP SYITEWQVKA VGSGSFTSSQ    960
VGSSSTQPSS GVHGGVQASP EPGDATPVLP SPLFTSIIDE GR* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd00192PTKc4.0e-54662927285+
cd00180PKc7.0e-55664851192+
smart00219TyrKc7.0e-55661926273+
smart00221STYKc2.0e-55661926273+
pfam11721Malectin2.0e-59390576189+
Gene Ontology
GO TermDescription
GO:0004672protein kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
EMBLCAD41800.201100211042OSJNBa0008M17.16 [Oryza sativa (japonica cultivar-group)]
EMBLCAD41882.20441002311025OSJNBa0093O08.1 [Oryza sativa (japonica cultivar-group)]
EMBLCAJ86312.10110021954H0525G02.9 [Oryza sativa (indica cultivar-group)]
GenBankEEE61685.105710021880hypothetical protein OsJ_16158 [Oryza sativa Japonica Group]
RefSeqXP_002448531.10210023956hypothetical protein SORBIDRAFT_06g028560 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3ulz_A064093914320A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
PDB3uim_A064093914320A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation
PDB3tl8_H064094522334B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector
PDB3tl8_G064094522334B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector
PDB3tl8_D064094522334B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector
Transmembrane Domains
StartEnd
527
600622
Signal Peptide
Cleavage Site
36
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
GR3436122646669290
GT0489462836679490
FL9492612137359470
CB6573272716248940
CB6574242736729440
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_030_00368.2Aquca_030_00368.1
Arabidopsis lyrata883240.424.594883240.424.594892639892640892638
Arabidopsis thalianaAT1G56130.1AT1G56140.1AT1G56120.1AT1G56145.2AT1G56145.1
Brachypodium distachyonBradi5g21870.2Bradi5g21857.1Bradi3g17756.2Bradi3g17756.1Bradi1g48230.1
Brassica rapaBra003333Bra007909Bra007908Bra030813Bra030815
Bra033670Bra035966Bra033958Bra007907Bra016226
Carica papayaevm.model.supercontig_2207.1evm.model.supercontig_748.4
Capsella rubellaCarubv10008172mCarubv10012587mCarubv10010895mCarubv10008256mCarubv10008071m.409.563
Carubv10008071m.409.563Carubv10008183m
Citrus clementinaCiclev10007054mCiclev10007687mCiclev10007686mCiclev10018029mCiclev10018038m
Ciclev10014641mCiclev10014117m
Citrus sinensisorange1.1g001658morange1.1g008072morange1.1g006515morange1.1g006206morange1.1g004413m
orange1.1g002562morange1.1g002581morange1.1g038019m
Cucumis sativusCucsa.239700.2Cucsa.239700.1
Eucalyptus grandisEucgr.F04434.2Eucgr.F04434.1Eucgr.F04306.1Eucgr.F04441.1Eucgr.F02391.1
Eucgr.F04436.1Eucgr.C02767.1Eucgr.L01594.1Eucgr.F04301.1Eucgr.L01787.1
Eucgr.B01468.1Eucgr.F04437.1
Fragaria vescamrna11624.1-v1.0-hybridmrna16334.1-v1.0-hybridmrna30033.1-v1.0-hybridmrna28048.1-v1.0-hybrid
Glycine maxGlyma09g15200.3Glyma09g15200.2Glyma09g15200.1Glyma08g25590.2Glyma08g25600.2
Glyma08g25600.1
Gossypium raimondiiGorai.002G105800.1Gorai.001G034000.1Gorai.011G052100.1Gorai.N011200.1Gorai.011G052400.2
Gorai.011G052400.1Gorai.001G131900.1Gorai.006G091400.1Gorai.011G052300.5Gorai.011G052300.4
Gorai.011G052300.3Gorai.011G052300.2Gorai.011G052300.1Gorai.011G052000.1Gorai.011G052600.8
Gorai.011G052600.7Gorai.011G052600.6Gorai.011G052600.5Gorai.011G052600.4Gorai.011G052600.3
Gorai.011G052600.2Gorai.011G052600.1
Linum usitatissimumLus10031199
Malus domesticaMDP0000210289MDP0000183693.203.372MDP0000183693.203.372MDP0000213902MDP0000251746
MDP0000269684MDP0000267728MDP0000281046MDP0000207688MDP0000183693.772.939
MDP0000183693.772.939MDP0000389758MDP0000278907MDP0000306337MDP0000384033
MDP0000171164MDP0000307776MDP0000212717MDP0000311945MDP0000308237
MDP0000283397MDP0000122720
Manihot esculentacassava4.1_001509mcassava4.1_001407mcassava4.1_025733mcassava4.1_030674m
Mimulus guttatusmgv1a002601mmgv1a018669mmgv1a000612m
Oryza sativaLOC_Os04g22470.1LOC_Os08g10300.1LOC_Os08g10290.1LOC_Os04g52640.3LOC_Os04g52640.2
LOC_Os04g52640.1LOC_Os04g52600.1LOC_Os04g52630.1LOC_Os05g17810.1LOC_Os04g52614.1
LOC_Os08g10330.1LOC_Os05g17604.6LOC_Os05g17604.5LOC_Os05g17604.4LOC_Os05g17604.3
LOC_Os05g17604.2LOC_Os05g17604.1LOC_Os05g16430.1LOC_Os08g10320.3LOC_Os08g10320.2
LOC_Os08g10320.1LOC_Os08g10310.3LOC_Os08g10310.2LOC_Os08g10310.1LOC_Os04g52606.1
LOC_Os05g16930.1LOC_Os06g07130.1LOC_Os04g52590.1LOC_Os08g10250.1LOC_Os05g16824.4
LOC_Os05g16824.3LOC_Os05g16824.2LOC_Os05g16824.1LOC_Os05g16740.1
Panicum virgatumPavirv00010367mPavirv00021132mPavirv00063388mPavirv00039446mPavirv00006527m
Pavirv00039639mPavirv00031150mPavirv00014784mPavirv00036213mPavirv00070332m
Pavirv00032467mPavirv00022623mPavirv00048042m
Physcomitrella patensPp1s244_27V6.2
Phaseolus vulgarisPhvul.011G169300.1
Picea abiesMA_170647g0010MA_162469g0010MA_73800g0010MA_8849269g0010MA_18275g0010
MA_17053g0010MA_954053g0010MA_54077g0010MA_10436782g0010MA_404302g0010
MA_461914g0010
Populus trichocarpaPotri.006G255100.2Potri.018G026800.2Potri.018G026800.1Potri.006G255100.1Potri.001G082900.5
Potri.001G082900.4Potri.001G082900.3Potri.001G082900.2Potri.001G082900.1Potri.003G148000.3
Potri.003G148000.2Potri.003G148000.1Potri.007G067900.3Potri.007G067900.2Potri.007G067900.1
Prunus persicappa017326mppa017049mppa001211mppa001152mppa000802m
ppa015982mppa026535m
Ricinus communis29848.m00461730169.m00632829497.m00008929624.m000325
Setaria italicaSi013203mSi013191mSi013178mSi009240mSi012655m
Si009468mSi009463mSi009322mSi028769mSi028790m
Si009325mSi009466mSi009259mSi006097m
Selaginella moellendorffii438852
Sorghum bicolorSb07g005820.1Sb06g028570.1Sb06g028560.1Sb10g004730.1
Thellungiella halophilaThhalv10012006mThhalv10018064mThhalv10011215mThhalv10016280mThhalv10016175m
Thhalv10019658mThhalv10012222m
Vitis viniferaGSVIVT01037993001.434.602GSVIVT01037993001.434.602GSVIVT01035865001GSVIVT01013621001GSVIVT01029720001.503.674
GSVIVT01029720001.503.674GSVIVT01037982001GSVIVT01038011001GSVIVT01013608001GSVIVT01013612001
GSVIVT01029718001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny  (This image is cropped. Click for full image.)