Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00041480m |
Family | GH10 |
Protein Properties | Length: 583 Molecular Weight: 64715.6 Isoelectric Point: 8.7068 |
Chromosome | Chromosome/Scaffold: 017220 Start: 6876 End: 9448 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 237 | 498 | 0 |
AGFPFGNTMTKEILNLPAYEKWFTSRFTVATFENEMKWYSTEWNQNQEDYRIPDAMLKLANKHGIRVRGHNVFWDDQNSQIRWVRPMNTDQLKAAMQKRL KSVVSRYAGKVIHWDVVNENLHFNFFEGKFGPTASAQIYNQVGQIDHSAILFMNEFNTLEQPGDLNPVPSKYVAKMTQIRSYPGNGGLKLGVGLESHFST PNFPYMRSALDTLAKLKLPMWLTEVDVVKGSNQVKFLEQVLREGYAHPSVNGMIMWAAWHAN |
Full Sequence |
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Protein Sequence Length: 583 Download |
MKVQREKLVL SLLCVASLQG CMVHSVEYDH TASIECLGDP MKPLYNGGII QNAEFNSGLM 60 GWSTHRNIKT GVRSSPSGNK FAVVRGAGGT LSSSGNVLPS QSVYQRVRMQ RDTHYSLSAW 120 LQVHAGSAHV KAVVKAPHGE RIIAGSVVAQ SGCWSMLKGG MTASSSGHGE IYFESDAPVD 180 IWVDSVSLQP FSFDEWDAHA RRSANATRRS TIRLVAKSAH DDKPMANATV IIELLRAGFP 240 FGNTMTKEIL NLPAYEKWFT SRFTVATFEN EMKWYSTEWN QNQEDYRIPD AMLKLANKHG 300 IRVRGHNVFW DDQNSQIRWV RPMNTDQLKA AMQKRLKSVV SRYAGKVIHW DVVNENLHFN 360 FFEGKFGPTA SAQIYNQVGQ IDHSAILFMN EFNTLEQPGD LNPVPSKYVA KMTQIRSYPG 420 NGGLKLGVGL ESHFSTPNFP YMRSALDTLA KLKLPMWLTE VDVVKGSNQV KFLEQVLREG 480 YAHPSVNGMI MWAAWHANGC YVMCLTDNNF KNLPVGNVVD KLIAEWKTHS KAATTDENGI 540 VELNLPHGEY NFTVTHPSVM GATTMTVDAA SSASEHTITV RV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 2.0e-26 | 236 | 463 | 241 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 2.0e-38 | 233 | 492 | 280 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 2.0e-69 | 272 | 519 | 272 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM08566.1 | 0 | 41 | 582 | 1 | 541 | AC092749_19 Putative 1,4-beta-xylanase [Oryza sativa Japonica Group] |
GenBank | EEC66792.1 | 0 | 8 | 582 | 5 | 578 | hypothetical protein OsI_33191 [Oryza sativa Indica Group] |
GenBank | EEE50812.1 | 0 | 41 | 582 | 1 | 533 | hypothetical protein OsJ_31205 [Oryza sativa Japonica Group] |
RefSeq | NP_001064415.1 | 0 | 8 | 582 | 5 | 578 | Os10g0351700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002461545.1 | 0 | 33 | 581 | 8 | 566 | hypothetical protein SORBIDRAFT_02g004490 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nq6_A | 2e-22 | 241 | 519 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1xyz_B | 1e-19 | 253 | 493 | 53 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 1e-19 | 253 | 493 | 53 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1e0v_A | 1e-17 | 226 | 463 | 1 | 239 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 1v0n_A | 2e-17 | 226 | 463 | 1 | 239 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |